Hb_002232_090

Information

Type -
Description -
Location Contig2232: 39015-39503
Sequence    

Annotation

kegg
ID rcu:RCOM_1381980
description STS14 protein precursor, putative
nr
ID XP_002522070.1
description STS14 protein precursor, putative [Ricinus communis]
swissprot
ID P09042
description Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3
trembl
ID B9S7V4
description STS14 protein, putative OS=Ricinus communis GN=RCOM_1381980 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_090 0.0 - - STS14 protein precursor, putative [Ricinus communis]
2 Hb_003992_230 0.2441536349 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
3 Hb_002498_040 0.267070926 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
4 Hb_001691_030 0.2879645741 - - lipoxygenase, putative [Ricinus communis]
5 Hb_135008_010 0.3017974478 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_005539_250 0.3153143321 - - -
7 Hb_000579_050 0.3182880033 - - PREDICTED: peroxidase 9 [Jatropha curcas]
8 Hb_026048_060 0.319652406 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_001101_030 0.3309410632 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
10 Hb_059379_020 0.3321384834 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
11 Hb_001635_150 0.3328569925 - - hypothetical protein JCGZ_24809 [Jatropha curcas]
12 Hb_008553_010 0.3336236928 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_046417_010 0.3373594102 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
14 Hb_000302_090 0.3380848529 - - PREDICTED: protein SGT1 homolog [Prunus mume]
15 Hb_005218_040 0.3470615706 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
16 Hb_008097_020 0.3482923841 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
17 Hb_008145_010 0.3564394454 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_099198_010 0.3616577983 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
19 Hb_058328_010 0.3641484861 - - JHL06B08.2 [Jatropha curcas]
20 Hb_084495_010 0.3653156778 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002232_090 Hb_002232_090 Hb_003992_230 Hb_003992_230 Hb_002232_090--Hb_003992_230 Hb_002498_040 Hb_002498_040 Hb_002232_090--Hb_002498_040 Hb_001691_030 Hb_001691_030 Hb_002232_090--Hb_001691_030 Hb_135008_010 Hb_135008_010 Hb_002232_090--Hb_135008_010 Hb_005539_250 Hb_005539_250 Hb_002232_090--Hb_005539_250 Hb_000579_050 Hb_000579_050 Hb_002232_090--Hb_000579_050 Hb_000302_090 Hb_000302_090 Hb_003992_230--Hb_000302_090 Hb_011437_030 Hb_011437_030 Hb_003992_230--Hb_011437_030 Hb_046417_010 Hb_046417_010 Hb_003992_230--Hb_046417_010 Hb_012754_020 Hb_012754_020 Hb_003992_230--Hb_012754_020 Hb_003185_090 Hb_003185_090 Hb_003992_230--Hb_003185_090 Hb_008097_020 Hb_008097_020 Hb_002498_040--Hb_008097_020 Hb_059379_020 Hb_059379_020 Hb_002498_040--Hb_059379_020 Hb_008145_010 Hb_008145_010 Hb_002498_040--Hb_008145_010 Hb_002027_310 Hb_002027_310 Hb_002498_040--Hb_002027_310 Hb_009230_040 Hb_009230_040 Hb_002498_040--Hb_009230_040 Hb_004855_050 Hb_004855_050 Hb_002498_040--Hb_004855_050 Hb_001579_290 Hb_001579_290 Hb_001691_030--Hb_001579_290 Hb_002849_090 Hb_002849_090 Hb_001691_030--Hb_002849_090 Hb_001268_330 Hb_001268_330 Hb_001691_030--Hb_001268_330 Hb_002603_030 Hb_002603_030 Hb_001691_030--Hb_002603_030 Hb_004976_050 Hb_004976_050 Hb_001691_030--Hb_004976_050 Hb_000815_280 Hb_000815_280 Hb_001691_030--Hb_000815_280 Hb_043623_020 Hb_043623_020 Hb_135008_010--Hb_043623_020 Hb_007125_010 Hb_007125_010 Hb_135008_010--Hb_007125_010 Hb_006683_010 Hb_006683_010 Hb_135008_010--Hb_006683_010 Hb_054362_010 Hb_054362_010 Hb_135008_010--Hb_054362_010 Hb_008779_010 Hb_008779_010 Hb_135008_010--Hb_008779_010 Hb_058328_010 Hb_058328_010 Hb_005539_250--Hb_058328_010 Hb_003124_090 Hb_003124_090 Hb_005539_250--Hb_003124_090 Hb_008494_050 Hb_008494_050 Hb_005539_250--Hb_008494_050 Hb_005539_250--Hb_003992_230 Hb_005539_250--Hb_000302_090 Hb_000364_200 Hb_000364_200 Hb_005539_250--Hb_000364_200 Hb_000985_070 Hb_000985_070 Hb_000579_050--Hb_000985_070 Hb_003799_020 Hb_003799_020 Hb_000579_050--Hb_003799_020 Hb_000302_210 Hb_000302_210 Hb_000579_050--Hb_000302_210 Hb_012760_020 Hb_012760_020 Hb_000579_050--Hb_012760_020 Hb_003747_110 Hb_003747_110 Hb_000579_050--Hb_003747_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0594064 0.102097 0.1863 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.184448 0.546851 0

CAGE analysis