Hb_003124_090

Information

Type -
Description -
Location Contig3124: 31873-35013
Sequence    

Annotation

kegg
ID cit:102616811
description F-box/LRR-repeat protein At5g02910-like
nr
ID XP_006436506.1
description hypothetical protein CICLE_v10031194mg [Citrus clementina]
swissprot
ID Q9LZ15
description Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1
trembl
ID V4TJ14
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031194mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_090 0.0 - - hypothetical protein CICLE_v10031194mg [Citrus clementina]
2 Hb_028995_030 0.2204948781 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
3 Hb_002947_020 0.2690946161 - - PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
4 Hb_005539_250 0.2757130202 - - -
5 Hb_000544_100 0.3085757338 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
6 Hb_001538_170 0.3203001158 - - -
7 Hb_004462_010 0.3328476553 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
8 Hb_058328_010 0.3352633583 - - JHL06B08.2 [Jatropha curcas]
9 Hb_000724_030 0.3438722582 - - PREDICTED: uncharacterized protein LOC105645165 [Jatropha curcas]
10 Hb_000364_200 0.3509881548 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_006588_030 0.3561252165 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
12 Hb_000144_140 0.3586958524 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
13 Hb_004724_120 0.3638218019 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
14 Hb_005218_040 0.365257013 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
15 Hb_000189_230 0.3654772633 - - Auxin-induced protein [Aegilops tauschii]
16 Hb_000209_110 0.3721147362 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
17 Hb_008494_050 0.3730858552 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_004648_010 0.3750159963 - - UDP-galactose/UDP-glucose transporter 4 [Morus notabilis]
19 Hb_001636_020 0.3778538744 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
20 Hb_022819_010 0.3788796679 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_003124_090 Hb_003124_090 Hb_028995_030 Hb_028995_030 Hb_003124_090--Hb_028995_030 Hb_002947_020 Hb_002947_020 Hb_003124_090--Hb_002947_020 Hb_005539_250 Hb_005539_250 Hb_003124_090--Hb_005539_250 Hb_000544_100 Hb_000544_100 Hb_003124_090--Hb_000544_100 Hb_001538_170 Hb_001538_170 Hb_003124_090--Hb_001538_170 Hb_004462_010 Hb_004462_010 Hb_003124_090--Hb_004462_010 Hb_000516_060 Hb_000516_060 Hb_028995_030--Hb_000516_060 Hb_028995_030--Hb_001538_170 Hb_001104_090 Hb_001104_090 Hb_028995_030--Hb_001104_090 Hb_027892_070 Hb_027892_070 Hb_028995_030--Hb_027892_070 Hb_003927_110 Hb_003927_110 Hb_028995_030--Hb_003927_110 Hb_000334_180 Hb_000334_180 Hb_002947_020--Hb_000334_180 Hb_002947_020--Hb_004462_010 Hb_000133_070 Hb_000133_070 Hb_002947_020--Hb_000133_070 Hb_003073_170 Hb_003073_170 Hb_002947_020--Hb_003073_170 Hb_002666_020 Hb_002666_020 Hb_002947_020--Hb_002666_020 Hb_034337_010 Hb_034337_010 Hb_002947_020--Hb_034337_010 Hb_058328_010 Hb_058328_010 Hb_005539_250--Hb_058328_010 Hb_008494_050 Hb_008494_050 Hb_005539_250--Hb_008494_050 Hb_003992_230 Hb_003992_230 Hb_005539_250--Hb_003992_230 Hb_000302_090 Hb_000302_090 Hb_005539_250--Hb_000302_090 Hb_000364_200 Hb_000364_200 Hb_005539_250--Hb_000364_200 Hb_000544_100--Hb_004462_010 Hb_000209_110 Hb_000209_110 Hb_000544_100--Hb_000209_110 Hb_004724_120 Hb_004724_120 Hb_000544_100--Hb_004724_120 Hb_002477_220 Hb_002477_220 Hb_000544_100--Hb_002477_220 Hb_001636_020 Hb_001636_020 Hb_000544_100--Hb_001636_020 Hb_182680_010 Hb_182680_010 Hb_000544_100--Hb_182680_010 Hb_017469_090 Hb_017469_090 Hb_001538_170--Hb_017469_090 Hb_001198_140 Hb_001198_140 Hb_001538_170--Hb_001198_140 Hb_001005_180 Hb_001005_180 Hb_001538_170--Hb_001005_180 Hb_000928_290 Hb_000928_290 Hb_001538_170--Hb_000928_290 Hb_001538_170--Hb_000364_200 Hb_147355_030 Hb_147355_030 Hb_001538_170--Hb_147355_030 Hb_000093_150 Hb_000093_150 Hb_004462_010--Hb_000093_150 Hb_127886_010 Hb_127886_010 Hb_004462_010--Hb_127886_010 Hb_001524_090 Hb_001524_090 Hb_004462_010--Hb_001524_090 Hb_004462_010--Hb_001636_020 Hb_004462_010--Hb_000209_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158182 0.0251678 0 0.116663 0 0.110755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0929396 0.385158 0

CAGE analysis