Hb_003927_110

Information

Type -
Description -
Location Contig3927: 85490-92110
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001478mg
description hypothetical protein
nr
ID XP_007206434.1
description hypothetical protein PRUPE_ppa001478mg [Prunus persica]
swissprot
ID Q9LX73
description E3 UFM1-protein ligase 1 homolog OS=Arabidopsis thaliana GN=At3g46220 PE=1 SV=1
trembl
ID M5WEC6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001478mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_110 0.0 - - hypothetical protein PRUPE_ppa001478mg [Prunus persica]
2 Hb_000516_060 0.2869005421 - - polyphenol oxidase [Hevea brasiliensis]
3 Hb_005062_080 0.292789571 - - MLO-like protein 4 [Gossypium arboreum]
4 Hb_000005_250 0.3010450135 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003893_140 0.3019277106 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
6 Hb_005873_010 0.3100823301 - - cysteine desulfurylase, putative [Ricinus communis]
7 Hb_000120_390 0.3113612325 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
8 Hb_001723_120 0.312170662 - - conserved hypothetical protein [Ricinus communis]
9 Hb_150360_020 0.315736714 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
10 Hb_032717_070 0.3182887246 - - PREDICTED: mucin-2-like [Jatropha curcas]
11 Hb_001355_130 0.3196647061 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
12 Hb_007919_020 0.3240868315 - - electron transporter, putative [Ricinus communis]
13 Hb_006275_010 0.3242768877 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
14 Hb_028995_030 0.3256761803 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
15 Hb_001476_060 0.3331836144 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
16 Hb_007943_160 0.333629744 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
17 Hb_001699_200 0.3347062194 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
18 Hb_003226_120 0.3399136073 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000056_220 0.3442571862 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
20 Hb_000824_050 0.347517344 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003927_110 Hb_003927_110 Hb_000516_060 Hb_000516_060 Hb_003927_110--Hb_000516_060 Hb_005062_080 Hb_005062_080 Hb_003927_110--Hb_005062_080 Hb_000005_250 Hb_000005_250 Hb_003927_110--Hb_000005_250 Hb_003893_140 Hb_003893_140 Hb_003927_110--Hb_003893_140 Hb_005873_010 Hb_005873_010 Hb_003927_110--Hb_005873_010 Hb_000120_390 Hb_000120_390 Hb_003927_110--Hb_000120_390 Hb_028995_030 Hb_028995_030 Hb_000516_060--Hb_028995_030 Hb_000516_060--Hb_000005_250 Hb_006275_010 Hb_006275_010 Hb_000516_060--Hb_006275_010 Hb_000056_220 Hb_000056_220 Hb_000516_060--Hb_000056_220 Hb_027892_070 Hb_027892_070 Hb_000516_060--Hb_027892_070 Hb_000579_020 Hb_000579_020 Hb_005062_080--Hb_000579_020 Hb_032717_070 Hb_032717_070 Hb_005062_080--Hb_032717_070 Hb_007919_020 Hb_007919_020 Hb_005062_080--Hb_007919_020 Hb_000926_100 Hb_000926_100 Hb_005062_080--Hb_000926_100 Hb_000302_090 Hb_000302_090 Hb_005062_080--Hb_000302_090 Hb_014894_010 Hb_014894_010 Hb_000005_250--Hb_014894_010 Hb_001258_060 Hb_001258_060 Hb_000005_250--Hb_001258_060 Hb_001246_030 Hb_001246_030 Hb_000005_250--Hb_001246_030 Hb_001946_030 Hb_001946_030 Hb_000005_250--Hb_001946_030 Hb_010334_020 Hb_010334_020 Hb_000005_250--Hb_010334_020 Hb_039145_010 Hb_039145_010 Hb_000005_250--Hb_039145_010 Hb_032225_030 Hb_032225_030 Hb_003893_140--Hb_032225_030 Hb_007545_140 Hb_007545_140 Hb_003893_140--Hb_007545_140 Hb_003893_140--Hb_000056_220 Hb_000915_070 Hb_000915_070 Hb_003893_140--Hb_000915_070 Hb_025254_020 Hb_025254_020 Hb_003893_140--Hb_025254_020 Hb_001369_140 Hb_001369_140 Hb_003893_140--Hb_001369_140 Hb_001332_040 Hb_001332_040 Hb_005873_010--Hb_001332_040 Hb_001699_200 Hb_001699_200 Hb_005873_010--Hb_001699_200 Hb_105602_010 Hb_105602_010 Hb_005873_010--Hb_105602_010 Hb_000614_170 Hb_000614_170 Hb_005873_010--Hb_000614_170 Hb_000621_020 Hb_000621_020 Hb_005873_010--Hb_000621_020 Hb_001623_160 Hb_001623_160 Hb_005873_010--Hb_001623_160 Hb_000165_210 Hb_000165_210 Hb_000120_390--Hb_000165_210 Hb_000318_200 Hb_000318_200 Hb_000120_390--Hb_000318_200 Hb_000417_320 Hb_000417_320 Hb_000120_390--Hb_000417_320 Hb_000414_110 Hb_000414_110 Hb_000120_390--Hb_000414_110 Hb_181110_010 Hb_181110_010 Hb_000120_390--Hb_181110_010 Hb_003226_120 Hb_003226_120 Hb_000120_390--Hb_003226_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0382406 0.0158981 0.0301903 0.124104 0 0.0203776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131125 0 0.0637449 0.23441 0

CAGE analysis