Hb_028995_030

Information

Type -
Description -
Location Contig28995: 17245-18335
Sequence    

Annotation

kegg
ID rcu:RCOM_0820180
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012082586.1
description PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
swissprot
ID Q9LHJ9
description Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1
trembl
ID B9SGT9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0820180 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028995_030 0.0 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
2 Hb_003124_090 0.2204948781 - - hypothetical protein CICLE_v10031194mg [Citrus clementina]
3 Hb_000516_060 0.2276249751 - - polyphenol oxidase [Hevea brasiliensis]
4 Hb_001538_170 0.3024234325 - - -
5 Hb_001104_090 0.3088983908 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
6 Hb_027892_070 0.315063792 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003927_110 0.3256761803 - - hypothetical protein PRUPE_ppa001478mg [Prunus persica]
8 Hb_006275_010 0.3277152471 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
9 Hb_000544_100 0.3340743764 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
10 Hb_000005_250 0.3402650407 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005539_250 0.3436948666 - - -
12 Hb_000056_220 0.3464991564 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
13 Hb_000209_110 0.3527282217 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
14 Hb_000364_200 0.3541721699 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_007943_160 0.3557449048 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
16 Hb_004462_010 0.3659802708 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
17 Hb_017469_090 0.3772145222 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
18 Hb_002947_020 0.3790262884 - - PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
19 Hb_039145_010 0.379974709 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_000093_150 0.3805385645 - - 6-phosphogluconolactonase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028995_030 Hb_028995_030 Hb_003124_090 Hb_003124_090 Hb_028995_030--Hb_003124_090 Hb_000516_060 Hb_000516_060 Hb_028995_030--Hb_000516_060 Hb_001538_170 Hb_001538_170 Hb_028995_030--Hb_001538_170 Hb_001104_090 Hb_001104_090 Hb_028995_030--Hb_001104_090 Hb_027892_070 Hb_027892_070 Hb_028995_030--Hb_027892_070 Hb_003927_110 Hb_003927_110 Hb_028995_030--Hb_003927_110 Hb_002947_020 Hb_002947_020 Hb_003124_090--Hb_002947_020 Hb_005539_250 Hb_005539_250 Hb_003124_090--Hb_005539_250 Hb_000544_100 Hb_000544_100 Hb_003124_090--Hb_000544_100 Hb_003124_090--Hb_001538_170 Hb_004462_010 Hb_004462_010 Hb_003124_090--Hb_004462_010 Hb_000516_060--Hb_003927_110 Hb_000005_250 Hb_000005_250 Hb_000516_060--Hb_000005_250 Hb_006275_010 Hb_006275_010 Hb_000516_060--Hb_006275_010 Hb_000056_220 Hb_000056_220 Hb_000516_060--Hb_000056_220 Hb_000516_060--Hb_027892_070 Hb_017469_090 Hb_017469_090 Hb_001538_170--Hb_017469_090 Hb_001198_140 Hb_001198_140 Hb_001538_170--Hb_001198_140 Hb_001005_180 Hb_001005_180 Hb_001538_170--Hb_001005_180 Hb_000928_290 Hb_000928_290 Hb_001538_170--Hb_000928_290 Hb_000364_200 Hb_000364_200 Hb_001538_170--Hb_000364_200 Hb_147355_030 Hb_147355_030 Hb_001538_170--Hb_147355_030 Hb_005392_100 Hb_005392_100 Hb_001104_090--Hb_005392_100 Hb_001104_090--Hb_027892_070 Hb_001104_090--Hb_147355_030 Hb_111189_010 Hb_111189_010 Hb_001104_090--Hb_111189_010 Hb_008226_110 Hb_008226_110 Hb_001104_090--Hb_008226_110 Hb_027892_070--Hb_001538_170 Hb_002762_090 Hb_002762_090 Hb_027892_070--Hb_002762_090 Hb_004143_120 Hb_004143_120 Hb_027892_070--Hb_004143_120 Hb_027892_070--Hb_000056_220 Hb_008226_020 Hb_008226_020 Hb_027892_070--Hb_008226_020 Hb_005062_080 Hb_005062_080 Hb_003927_110--Hb_005062_080 Hb_003927_110--Hb_000005_250 Hb_003893_140 Hb_003893_140 Hb_003927_110--Hb_003893_140 Hb_005873_010 Hb_005873_010 Hb_003927_110--Hb_005873_010 Hb_000120_390 Hb_000120_390 Hb_003927_110--Hb_000120_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190603 0 0 0.156184 0 0.125979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760653 0 0.107233 0.655729 0

CAGE analysis