Hb_000516_060

Information

Type -
Description -
Location Contig516: 109455-111449
Sequence    

Annotation

kegg
ID rcu:RCOM_0935110
description Polyphenol oxidase, chloroplast precursor, putative (EC:1.10.3.1)
nr
ID AHF20575.1
description polyphenol oxidase [Hevea brasiliensis]
swissprot
ID P43309
description Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1
trembl
ID B9RZ47
description Polyphenol oxidase, chloroplast, putative OS=Ricinus communis GN=RCOM_0935110 PE=4 SV=1
Gene Ontology
ID GO:0004097
description polyphenol oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000516_060 0.0 - - polyphenol oxidase [Hevea brasiliensis]
2 Hb_028995_030 0.2276249751 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
3 Hb_003927_110 0.2869005421 - - hypothetical protein PRUPE_ppa001478mg [Prunus persica]
4 Hb_000005_250 0.3452111152 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006275_010 0.3524313831 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
6 Hb_000056_220 0.359454992 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
7 Hb_027892_070 0.3693548711 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007181_010 0.3731894889 - - polyphenol oxidase [Hevea brasiliensis]
9 Hb_003124_090 0.3831111375 - - hypothetical protein CICLE_v10031194mg [Citrus clementina]
10 Hb_001355_130 0.3931823869 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
11 Hb_000025_430 0.3953010655 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
12 Hb_150751_010 0.4011935509 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
13 Hb_000579_020 0.4024383499 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
14 Hb_001104_090 0.4033494377 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
15 Hb_078001_010 0.4048922192 - - Uncharacterized protein TCM_000398 [Theobroma cacao]
16 Hb_000120_390 0.4070976039 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
17 Hb_001538_170 0.4075928778 - - -
18 Hb_001258_060 0.407736911 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
19 Hb_001723_120 0.408951214 - - conserved hypothetical protein [Ricinus communis]
20 Hb_094437_060 0.4117108767 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]

Gene co-expression network

sample Hb_000516_060 Hb_000516_060 Hb_028995_030 Hb_028995_030 Hb_000516_060--Hb_028995_030 Hb_003927_110 Hb_003927_110 Hb_000516_060--Hb_003927_110 Hb_000005_250 Hb_000005_250 Hb_000516_060--Hb_000005_250 Hb_006275_010 Hb_006275_010 Hb_000516_060--Hb_006275_010 Hb_000056_220 Hb_000056_220 Hb_000516_060--Hb_000056_220 Hb_027892_070 Hb_027892_070 Hb_000516_060--Hb_027892_070 Hb_003124_090 Hb_003124_090 Hb_028995_030--Hb_003124_090 Hb_001538_170 Hb_001538_170 Hb_028995_030--Hb_001538_170 Hb_001104_090 Hb_001104_090 Hb_028995_030--Hb_001104_090 Hb_028995_030--Hb_027892_070 Hb_028995_030--Hb_003927_110 Hb_005062_080 Hb_005062_080 Hb_003927_110--Hb_005062_080 Hb_003927_110--Hb_000005_250 Hb_003893_140 Hb_003893_140 Hb_003927_110--Hb_003893_140 Hb_005873_010 Hb_005873_010 Hb_003927_110--Hb_005873_010 Hb_000120_390 Hb_000120_390 Hb_003927_110--Hb_000120_390 Hb_014894_010 Hb_014894_010 Hb_000005_250--Hb_014894_010 Hb_001258_060 Hb_001258_060 Hb_000005_250--Hb_001258_060 Hb_001246_030 Hb_001246_030 Hb_000005_250--Hb_001246_030 Hb_001946_030 Hb_001946_030 Hb_000005_250--Hb_001946_030 Hb_010334_020 Hb_010334_020 Hb_000005_250--Hb_010334_020 Hb_039145_010 Hb_039145_010 Hb_000005_250--Hb_039145_010 Hb_006275_010--Hb_000056_220 Hb_007943_160 Hb_007943_160 Hb_006275_010--Hb_007943_160 Hb_000915_070 Hb_000915_070 Hb_006275_010--Hb_000915_070 Hb_006275_010--Hb_000120_390 Hb_001206_090 Hb_001206_090 Hb_006275_010--Hb_001206_090 Hb_004976_050 Hb_004976_050 Hb_006275_010--Hb_004976_050 Hb_000471_080 Hb_000471_080 Hb_000056_220--Hb_000471_080 Hb_007545_140 Hb_007545_140 Hb_000056_220--Hb_007545_140 Hb_003602_070 Hb_003602_070 Hb_000056_220--Hb_003602_070 Hb_000056_220--Hb_000915_070 Hb_000056_220--Hb_003893_140 Hb_027892_070--Hb_001538_170 Hb_002762_090 Hb_002762_090 Hb_027892_070--Hb_002762_090 Hb_027892_070--Hb_001104_090 Hb_004143_120 Hb_004143_120 Hb_027892_070--Hb_004143_120 Hb_027892_070--Hb_000056_220 Hb_008226_020 Hb_008226_020 Hb_027892_070--Hb_008226_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106492 0 0 0.0464346 0 0.0120278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111102 0 0.041209 0.261339 0

CAGE analysis