Hb_001104_090

Information

Type -
Description -
Location Contig1104: 92307-94683
Sequence    

Annotation

kegg
ID -
description -
nr
ID KJB62255.1
description hypothetical protein B456_009G408400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2V0J7
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G408400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_090 0.0 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
2 Hb_005392_100 0.2762376985 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
3 Hb_027892_070 0.2873180869 - - conserved hypothetical protein [Ricinus communis]
4 Hb_147355_030 0.2979549114 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
5 Hb_111189_010 0.3034066965 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
6 Hb_028995_030 0.3088983908 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
7 Hb_008226_110 0.3136136879 - - uncharacterized protein LOC100501343 [Zea mays]
8 Hb_003549_070 0.3161837678 - - -
9 Hb_000589_210 0.316480469 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
10 Hb_182680_010 0.3190887429 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
11 Hb_007897_040 0.3321707835 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001538_170 0.3336304019 - - -
13 Hb_006971_080 0.3350953481 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_005085_010 0.3361276465 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_000364_200 0.3372779613 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_002267_120 0.3390084664 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
17 Hb_000056_220 0.3394736482 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
18 Hb_007416_130 0.3400458534 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
19 Hb_000466_150 0.3404866608 - - hypothetical protein JCGZ_02123 [Jatropha curcas]
20 Hb_089610_010 0.3436776786 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]

Gene co-expression network

sample Hb_001104_090 Hb_001104_090 Hb_005392_100 Hb_005392_100 Hb_001104_090--Hb_005392_100 Hb_027892_070 Hb_027892_070 Hb_001104_090--Hb_027892_070 Hb_147355_030 Hb_147355_030 Hb_001104_090--Hb_147355_030 Hb_111189_010 Hb_111189_010 Hb_001104_090--Hb_111189_010 Hb_028995_030 Hb_028995_030 Hb_001104_090--Hb_028995_030 Hb_008226_110 Hb_008226_110 Hb_001104_090--Hb_008226_110 Hb_005392_100--Hb_008226_110 Hb_006971_080 Hb_006971_080 Hb_005392_100--Hb_006971_080 Hb_002267_120 Hb_002267_120 Hb_005392_100--Hb_002267_120 Hb_005392_100--Hb_147355_030 Hb_002942_180 Hb_002942_180 Hb_005392_100--Hb_002942_180 Hb_131652_010 Hb_131652_010 Hb_005392_100--Hb_131652_010 Hb_001538_170 Hb_001538_170 Hb_027892_070--Hb_001538_170 Hb_002762_090 Hb_002762_090 Hb_027892_070--Hb_002762_090 Hb_004143_120 Hb_004143_120 Hb_027892_070--Hb_004143_120 Hb_000056_220 Hb_000056_220 Hb_027892_070--Hb_000056_220 Hb_008226_020 Hb_008226_020 Hb_027892_070--Hb_008226_020 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_147355_030--Hb_002267_120 Hb_147355_030--Hb_006971_080 Hb_147355_030--Hb_008226_110 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_007897_040 Hb_007897_040 Hb_111189_010--Hb_007897_040 Hb_000720_010 Hb_000720_010 Hb_111189_010--Hb_000720_010 Hb_001213_010 Hb_001213_010 Hb_111189_010--Hb_001213_010 Hb_054102_010 Hb_054102_010 Hb_111189_010--Hb_054102_010 Hb_148383_010 Hb_148383_010 Hb_111189_010--Hb_148383_010 Hb_011161_060 Hb_011161_060 Hb_111189_010--Hb_011161_060 Hb_003124_090 Hb_003124_090 Hb_028995_030--Hb_003124_090 Hb_000516_060 Hb_000516_060 Hb_028995_030--Hb_000516_060 Hb_028995_030--Hb_001538_170 Hb_028995_030--Hb_027892_070 Hb_003927_110 Hb_003927_110 Hb_028995_030--Hb_003927_110 Hb_008226_110--Hb_006971_080 Hb_008226_110--Hb_002267_120 Hb_008226_110--Hb_002942_180 Hb_008226_110--Hb_131652_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136682 0 0.0825069 0.680127 0 0.889806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.492411 0 0 4.16642 0

CAGE analysis