Hb_111189_010

Information

Type -
Description -
Location Contig111189: 122-1285
Sequence    

Annotation

kegg
ID tcc:TCM_028455
description Gag protease polyprotein, putative
nr
ID XP_012487895.1
description PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MYZ3
description Protein MCM10 OS=Gossypium arboreum GN=F383_31527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111189_010 0.0 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
2 Hb_007897_040 0.2030620696 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000720_010 0.2082392218 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
4 Hb_001213_010 0.2087999536 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_054102_010 0.2093808031 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_148383_010 0.2111957989 - - PREDICTED: protein YLS9 [Jatropha curcas]
7 Hb_011161_060 0.2113827708 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
8 Hb_000671_010 0.2119631853 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
9 Hb_000576_080 0.2134580571 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002757_050 0.2144450751 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
11 Hb_006153_190 0.2176253185 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
12 Hb_005000_310 0.2180765492 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
13 Hb_000205_290 0.2187527601 - - -
14 Hb_126535_010 0.2252041517 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
15 Hb_000200_180 0.2271701337 - - -
16 Hb_000948_040 0.2285956485 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
17 Hb_000019_220 0.2293089302 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
18 Hb_175167_020 0.2305019458 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000402_220 0.2315416435 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_005066_010 0.2334349111 - - FAD-binding domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_111189_010 Hb_111189_010 Hb_007897_040 Hb_007897_040 Hb_111189_010--Hb_007897_040 Hb_000720_010 Hb_000720_010 Hb_111189_010--Hb_000720_010 Hb_001213_010 Hb_001213_010 Hb_111189_010--Hb_001213_010 Hb_054102_010 Hb_054102_010 Hb_111189_010--Hb_054102_010 Hb_148383_010 Hb_148383_010 Hb_111189_010--Hb_148383_010 Hb_011161_060 Hb_011161_060 Hb_111189_010--Hb_011161_060 Hb_007320_040 Hb_007320_040 Hb_007897_040--Hb_007320_040 Hb_002966_030 Hb_002966_030 Hb_007897_040--Hb_002966_030 Hb_177880_010 Hb_177880_010 Hb_007897_040--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_007897_040--Hb_004834_020 Hb_002747_010 Hb_002747_010 Hb_007897_040--Hb_002747_010 Hb_126535_010 Hb_126535_010 Hb_007897_040--Hb_126535_010 Hb_000720_010--Hb_011161_060 Hb_000720_010--Hb_001213_010 Hb_000671_010 Hb_000671_010 Hb_000720_010--Hb_000671_010 Hb_000720_010--Hb_054102_010 Hb_002757_050 Hb_002757_050 Hb_000720_010--Hb_002757_050 Hb_000720_010--Hb_148383_010 Hb_001213_010--Hb_054102_010 Hb_001213_010--Hb_148383_010 Hb_000576_080 Hb_000576_080 Hb_001213_010--Hb_000576_080 Hb_001213_010--Hb_011161_060 Hb_001213_010--Hb_000671_010 Hb_054102_010--Hb_148383_010 Hb_054102_010--Hb_000576_080 Hb_054102_010--Hb_011161_060 Hb_054102_010--Hb_000671_010 Hb_148383_010--Hb_000576_080 Hb_148383_010--Hb_011161_060 Hb_000115_180 Hb_000115_180 Hb_148383_010--Hb_000115_180 Hb_011161_060--Hb_000671_010 Hb_011161_060--Hb_002757_050 Hb_000205_290 Hb_000205_290 Hb_011161_060--Hb_000205_290 Hb_000948_040 Hb_000948_040 Hb_011161_060--Hb_000948_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0677921 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0467194 0 0 0.442655 0

CAGE analysis