Hb_027892_070

Information

Type -
Description -
Location Contig27892: 128344-131332
Sequence    

Annotation

kegg
ID rcu:RCOM_0711270
description hypothetical protein
nr
ID XP_002516252.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5BPZ5
description Protein LAZ1 homolog 2 OS=Arabidopsis thaliana GN=At1g23070 PE=2 SV=1
trembl
ID B9RR83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711270 PE=4 SV=1
Gene Ontology
ID GO:0009062
description transmembrane protein 184 homolog ddb_g0279555 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027892_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001538_170 0.2846512477 - - -
3 Hb_002762_090 0.2851487377 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_001104_090 0.2873180869 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
5 Hb_004143_120 0.2968110136 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
6 Hb_000056_220 0.2975305211 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
7 Hb_008226_020 0.2989811561 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
8 Hb_188681_010 0.3132929156 - - hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
9 Hb_028995_030 0.315063792 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_001104_200 0.3163930021 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
11 Hb_009113_010 0.3168670256 - - Chalcone synthase, putative [Ricinus communis]
12 Hb_182680_010 0.3206351829 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_000466_150 0.3206976639 - - hypothetical protein JCGZ_02123 [Jatropha curcas]
14 Hb_001863_200 0.3217070141 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
15 Hb_000471_080 0.3219483528 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_029510_110 0.3235417571 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
17 Hb_036069_020 0.3273295459 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
18 Hb_006588_030 0.3279874994 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
19 Hb_000203_220 0.3307658055 - - PREDICTED: uncharacterized protein LOC105168575 [Sesamum indicum]
20 Hb_000116_550 0.3308701333 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027892_070 Hb_027892_070 Hb_001538_170 Hb_001538_170 Hb_027892_070--Hb_001538_170 Hb_002762_090 Hb_002762_090 Hb_027892_070--Hb_002762_090 Hb_001104_090 Hb_001104_090 Hb_027892_070--Hb_001104_090 Hb_004143_120 Hb_004143_120 Hb_027892_070--Hb_004143_120 Hb_000056_220 Hb_000056_220 Hb_027892_070--Hb_000056_220 Hb_008226_020 Hb_008226_020 Hb_027892_070--Hb_008226_020 Hb_017469_090 Hb_017469_090 Hb_001538_170--Hb_017469_090 Hb_001198_140 Hb_001198_140 Hb_001538_170--Hb_001198_140 Hb_001005_180 Hb_001005_180 Hb_001538_170--Hb_001005_180 Hb_000928_290 Hb_000928_290 Hb_001538_170--Hb_000928_290 Hb_000364_200 Hb_000364_200 Hb_001538_170--Hb_000364_200 Hb_147355_030 Hb_147355_030 Hb_001538_170--Hb_147355_030 Hb_116478_010 Hb_116478_010 Hb_002762_090--Hb_116478_010 Hb_000300_590 Hb_000300_590 Hb_002762_090--Hb_000300_590 Hb_001758_120 Hb_001758_120 Hb_002762_090--Hb_001758_120 Hb_025254_020 Hb_025254_020 Hb_002762_090--Hb_025254_020 Hb_002475_070 Hb_002475_070 Hb_002762_090--Hb_002475_070 Hb_002016_020 Hb_002016_020 Hb_002762_090--Hb_002016_020 Hb_005392_100 Hb_005392_100 Hb_001104_090--Hb_005392_100 Hb_001104_090--Hb_147355_030 Hb_111189_010 Hb_111189_010 Hb_001104_090--Hb_111189_010 Hb_028995_030 Hb_028995_030 Hb_001104_090--Hb_028995_030 Hb_008226_110 Hb_008226_110 Hb_001104_090--Hb_008226_110 Hb_000343_100 Hb_000343_100 Hb_004143_120--Hb_000343_100 Hb_182680_010 Hb_182680_010 Hb_004143_120--Hb_182680_010 Hb_003428_100 Hb_003428_100 Hb_004143_120--Hb_003428_100 Hb_005389_190 Hb_005389_190 Hb_004143_120--Hb_005389_190 Hb_002233_040 Hb_002233_040 Hb_004143_120--Hb_002233_040 Hb_000181_020 Hb_000181_020 Hb_004143_120--Hb_000181_020 Hb_006275_010 Hb_006275_010 Hb_000056_220--Hb_006275_010 Hb_000471_080 Hb_000471_080 Hb_000056_220--Hb_000471_080 Hb_007545_140 Hb_007545_140 Hb_000056_220--Hb_007545_140 Hb_003602_070 Hb_003602_070 Hb_000056_220--Hb_003602_070 Hb_000915_070 Hb_000915_070 Hb_000056_220--Hb_000915_070 Hb_003893_140 Hb_003893_140 Hb_000056_220--Hb_003893_140 Hb_130563_010 Hb_130563_010 Hb_008226_020--Hb_130563_010 Hb_000653_010 Hb_000653_010 Hb_008226_020--Hb_000653_010 Hb_036069_020 Hb_036069_020 Hb_008226_020--Hb_036069_020 Hb_000911_050 Hb_000911_050 Hb_008226_020--Hb_000911_050 Hb_003097_200 Hb_003097_200 Hb_008226_020--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_008226_020--Hb_001545_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0672713 0 0 0.0826051 0 0.0349021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0383887 0 0 0.483477 0.062654

CAGE analysis