Hb_002233_040

Information

Type -
Description -
Location Contig2233: 43043-47125
Sequence    

Annotation

kegg
ID rcu:RCOM_0759470
description yth domain-containing protein, putative
nr
ID XP_012066665.1
description PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067LD65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00237 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_040 0.0 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
2 Hb_004143_120 0.1951304789 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
3 Hb_000975_150 0.2309604788 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
4 Hb_000061_090 0.232888869 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
5 Hb_005389_190 0.236886391 - - glutamate receptor 2 plant, putative [Ricinus communis]
6 Hb_046994_010 0.2383623192 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_107201_010 0.251147883 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_004800_170 0.2541280336 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
9 Hb_007439_010 0.2583242352 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
10 Hb_005545_040 0.2640935628 - - PREDICTED: protein LURP-one-related 14 isoform X2 [Nelumbo nucifera]
11 Hb_003636_070 0.265125805 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003947_040 0.2718471126 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
13 Hb_060411_010 0.2721291787 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
14 Hb_000675_060 0.2759003259 - - cytochrome P450, putative [Ricinus communis]
15 Hb_002006_140 0.2763792574 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
16 Hb_003428_100 0.2795636929 - - Polygalacturonase precursor, putative [Ricinus communis]
17 Hb_000011_290 0.2845525987 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
18 Hb_000390_260 0.2870742403 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
19 Hb_000414_110 0.2914851481 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
20 Hb_000343_100 0.2948139492 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002233_040 Hb_002233_040 Hb_004143_120 Hb_004143_120 Hb_002233_040--Hb_004143_120 Hb_000975_150 Hb_000975_150 Hb_002233_040--Hb_000975_150 Hb_000061_090 Hb_000061_090 Hb_002233_040--Hb_000061_090 Hb_005389_190 Hb_005389_190 Hb_002233_040--Hb_005389_190 Hb_046994_010 Hb_046994_010 Hb_002233_040--Hb_046994_010 Hb_107201_010 Hb_107201_010 Hb_002233_040--Hb_107201_010 Hb_000343_100 Hb_000343_100 Hb_004143_120--Hb_000343_100 Hb_182680_010 Hb_182680_010 Hb_004143_120--Hb_182680_010 Hb_003428_100 Hb_003428_100 Hb_004143_120--Hb_003428_100 Hb_004143_120--Hb_005389_190 Hb_000181_020 Hb_000181_020 Hb_004143_120--Hb_000181_020 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_003096_050 Hb_003096_050 Hb_000975_150--Hb_003096_050 Hb_007894_250 Hb_007894_250 Hb_000975_150--Hb_007894_250 Hb_000056_330 Hb_000056_330 Hb_000975_150--Hb_000056_330 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_001190_060 Hb_001190_060 Hb_000975_150--Hb_001190_060 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_112203_010 Hb_112203_010 Hb_005389_190--Hb_112203_010 Hb_003517_010 Hb_003517_010 Hb_005389_190--Hb_003517_010 Hb_005389_190--Hb_000343_100 Hb_144004_010 Hb_144004_010 Hb_005389_190--Hb_144004_010 Hb_002006_140 Hb_002006_140 Hb_005389_190--Hb_002006_140 Hb_046994_010--Hb_004800_170 Hb_002301_390 Hb_002301_390 Hb_046994_010--Hb_002301_390 Hb_046994_010--Hb_004143_120 Hb_046994_010--Hb_005389_190 Hb_046994_010--Hb_144004_010 Hb_000140_190 Hb_000140_190 Hb_107201_010--Hb_000140_190 Hb_029510_110 Hb_029510_110 Hb_107201_010--Hb_029510_110 Hb_001004_100 Hb_001004_100 Hb_107201_010--Hb_001004_100 Hb_061195_010 Hb_061195_010 Hb_107201_010--Hb_061195_010 Hb_012239_080 Hb_012239_080 Hb_107201_010--Hb_012239_080 Hb_000471_080 Hb_000471_080 Hb_107201_010--Hb_000471_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181365 0.247269 0.151087 0.145497 0.291819 0.266562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77679 1.37829 0.260677 9.69908 1.82564

CAGE analysis