Hb_005062_080

Information

Type -
Description -
Location Contig5062: 69895-77696
Sequence    

Annotation

kegg
ID rcu:RCOM_0321050
description calmodulin binding protein, putative
nr
ID KHG00015.1
description MLO-like protein 4 [Gossypium arboreum]
swissprot
ID O23693
description MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2
trembl
ID A0A0B0MGV1
description MLO-like protein OS=Gossypium arboreum GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016021
description mlo-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005062_080 0.0 - - MLO-like protein 4 [Gossypium arboreum]
2 Hb_000579_020 0.2560101641 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
3 Hb_032717_070 0.257125902 - - PREDICTED: mucin-2-like [Jatropha curcas]
4 Hb_003927_110 0.292789571 - - hypothetical protein PRUPE_ppa001478mg [Prunus persica]
5 Hb_007919_020 0.3070480875 - - electron transporter, putative [Ricinus communis]
6 Hb_000926_100 0.3117575423 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
7 Hb_000302_090 0.3149561636 - - PREDICTED: protein SGT1 homolog [Prunus mume]
8 Hb_009571_010 0.3176196498 - - early-responsive to dehydration family protein [Populus trichocarpa]
9 Hb_021576_020 0.3218712186 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
10 Hb_003992_230 0.3236252227 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
11 Hb_000820_050 0.3262400998 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
12 Hb_000126_110 0.3305648369 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
13 Hb_000820_060 0.3390953935 - - -
14 Hb_011437_030 0.339671382 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
15 Hb_000043_070 0.3427039337 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
16 Hb_000222_030 0.3444016071 - - -
17 Hb_002311_060 0.3474348322 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
18 Hb_000331_120 0.3522343675 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001638_230 0.3564922822 - - RNA-binding region-containing protein, putative [Ricinus communis]
20 Hb_005725_050 0.3591763508 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]

Gene co-expression network

sample Hb_005062_080 Hb_005062_080 Hb_000579_020 Hb_000579_020 Hb_005062_080--Hb_000579_020 Hb_032717_070 Hb_032717_070 Hb_005062_080--Hb_032717_070 Hb_003927_110 Hb_003927_110 Hb_005062_080--Hb_003927_110 Hb_007919_020 Hb_007919_020 Hb_005062_080--Hb_007919_020 Hb_000926_100 Hb_000926_100 Hb_005062_080--Hb_000926_100 Hb_000302_090 Hb_000302_090 Hb_005062_080--Hb_000302_090 Hb_027028_030 Hb_027028_030 Hb_000579_020--Hb_027028_030 Hb_004871_070 Hb_004871_070 Hb_000579_020--Hb_004871_070 Hb_000457_210 Hb_000457_210 Hb_000579_020--Hb_000457_210 Hb_003464_030 Hb_003464_030 Hb_000579_020--Hb_003464_030 Hb_000043_070 Hb_000043_070 Hb_000579_020--Hb_000043_070 Hb_007747_140 Hb_007747_140 Hb_000579_020--Hb_007747_140 Hb_000038_120 Hb_000038_120 Hb_032717_070--Hb_000038_120 Hb_009571_010 Hb_009571_010 Hb_032717_070--Hb_009571_010 Hb_021576_020 Hb_021576_020 Hb_032717_070--Hb_021576_020 Hb_005725_050 Hb_005725_050 Hb_032717_070--Hb_005725_050 Hb_032717_070--Hb_007919_020 Hb_000516_060 Hb_000516_060 Hb_003927_110--Hb_000516_060 Hb_000005_250 Hb_000005_250 Hb_003927_110--Hb_000005_250 Hb_003893_140 Hb_003893_140 Hb_003927_110--Hb_003893_140 Hb_005873_010 Hb_005873_010 Hb_003927_110--Hb_005873_010 Hb_000120_390 Hb_000120_390 Hb_003927_110--Hb_000120_390 Hb_001946_220 Hb_001946_220 Hb_007919_020--Hb_001946_220 Hb_000270_180 Hb_000270_180 Hb_007919_020--Hb_000270_180 Hb_000368_030 Hb_000368_030 Hb_007919_020--Hb_000368_030 Hb_001205_080 Hb_001205_080 Hb_007919_020--Hb_001205_080 Hb_000742_010 Hb_000742_010 Hb_007919_020--Hb_000742_010 Hb_000648_050 Hb_000648_050 Hb_007919_020--Hb_000648_050 Hb_000450_160 Hb_000450_160 Hb_000926_100--Hb_000450_160 Hb_001623_090 Hb_001623_090 Hb_000926_100--Hb_001623_090 Hb_003972_060 Hb_003972_060 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_002998_070 Hb_002998_070 Hb_000926_100--Hb_002998_070 Hb_003680_210 Hb_003680_210 Hb_000926_100--Hb_003680_210 Hb_003992_230 Hb_003992_230 Hb_000302_090--Hb_003992_230 Hb_002284_180 Hb_002284_180 Hb_000302_090--Hb_002284_180 Hb_011437_030 Hb_011437_030 Hb_000302_090--Hb_011437_030 Hb_000302_090--Hb_001623_090 Hb_003185_090 Hb_003185_090 Hb_000302_090--Hb_003185_090 Hb_012754_020 Hb_012754_020 Hb_000302_090--Hb_012754_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0357328 0.0118978 0.0445492 0.0433218 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0327365 0 0.0966184 0.102859 0

CAGE analysis