Hb_005725_050

Information

Type -
Description -
Location Contig5725: 12729-14084
Sequence    

Annotation

kegg
ID rcu:RCOM_1586740
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012068187.1
description PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
swissprot
ID Q9FXA4
description U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1
trembl
ID A0A067KZG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16003 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_050 0.0 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
2 Hb_000139_140 0.1549857544 - - Acyl-CoA synthetase [Ricinus communis]
3 Hb_135757_010 0.162565873 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
4 Hb_000174_140 0.1725672331 - - JHL23J11.8 [Jatropha curcas]
5 Hb_000009_140 0.1729202767 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
6 Hb_000735_080 0.1748440486 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
7 Hb_001021_070 0.1756609188 - - unnamed protein product [Vitis vinifera]
8 Hb_003470_050 0.1770896115 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_003683_130 0.1771040702 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
10 Hb_000038_120 0.1797817488 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
11 Hb_000363_410 0.1804601846 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
12 Hb_031527_080 0.1815779537 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
13 Hb_000062_530 0.1852223738 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
14 Hb_000479_110 0.1880477152 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
15 Hb_000094_250 0.190101538 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
16 Hb_004680_010 0.1911378515 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
17 Hb_023344_060 0.1928735388 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
18 Hb_001004_140 0.1935819018 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
19 Hb_029510_100 0.1937513557 - - scab resistance family protein [Populus trichocarpa]
20 Hb_016734_010 0.1940016568 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_050 Hb_005725_050 Hb_000139_140 Hb_000139_140 Hb_005725_050--Hb_000139_140 Hb_135757_010 Hb_135757_010 Hb_005725_050--Hb_135757_010 Hb_000174_140 Hb_000174_140 Hb_005725_050--Hb_000174_140 Hb_000009_140 Hb_000009_140 Hb_005725_050--Hb_000009_140 Hb_000735_080 Hb_000735_080 Hb_005725_050--Hb_000735_080 Hb_001021_070 Hb_001021_070 Hb_005725_050--Hb_001021_070 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_000679_100 Hb_000679_100 Hb_135757_010--Hb_000679_100 Hb_001051_070 Hb_001051_070 Hb_135757_010--Hb_001051_070 Hb_029695_050 Hb_029695_050 Hb_135757_010--Hb_029695_050 Hb_011930_150 Hb_011930_150 Hb_135757_010--Hb_011930_150 Hb_001159_030 Hb_001159_030 Hb_135757_010--Hb_001159_030 Hb_030736_060 Hb_030736_060 Hb_135757_010--Hb_030736_060 Hb_000008_090 Hb_000008_090 Hb_000174_140--Hb_000008_090 Hb_000251_040 Hb_000251_040 Hb_000174_140--Hb_000251_040 Hb_001004_140 Hb_001004_140 Hb_000174_140--Hb_001004_140 Hb_000260_660 Hb_000260_660 Hb_000174_140--Hb_000260_660 Hb_001396_010 Hb_001396_010 Hb_000174_140--Hb_001396_010 Hb_002217_220 Hb_002217_220 Hb_000174_140--Hb_002217_220 Hb_005504_030 Hb_005504_030 Hb_000009_140--Hb_005504_030 Hb_004586_240 Hb_004586_240 Hb_000009_140--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_000009_140--Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_000009_140--Hb_000072_020 Hb_000009_140--Hb_009646_010 Hb_010068_070 Hb_010068_070 Hb_000009_140--Hb_010068_070 Hb_004680_010 Hb_004680_010 Hb_000735_080--Hb_004680_010 Hb_016734_010 Hb_016734_010 Hb_000735_080--Hb_016734_010 Hb_000735_140 Hb_000735_140 Hb_000735_080--Hb_000735_140 Hb_000203_270 Hb_000203_270 Hb_000735_080--Hb_000203_270 Hb_002304_050 Hb_002304_050 Hb_000735_080--Hb_002304_050 Hb_000012_240 Hb_000012_240 Hb_000735_080--Hb_000012_240 Hb_001646_020 Hb_001646_020 Hb_001021_070--Hb_001646_020 Hb_000479_110 Hb_000479_110 Hb_001021_070--Hb_000479_110 Hb_052135_020 Hb_052135_020 Hb_001021_070--Hb_052135_020 Hb_002687_060 Hb_002687_060 Hb_001021_070--Hb_002687_060 Hb_005298_020 Hb_005298_020 Hb_001021_070--Hb_005298_020 Hb_022092_010 Hb_022092_010 Hb_001021_070--Hb_022092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27239 3.37092 4.0014 6.87895 1.22151 0.514847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.912843 0.441917 3.35909 5.97324 0.862836

CAGE analysis