Hb_002947_020

Information

Type -
Description -
Location Contig2947: 25160-31544
Sequence    

Annotation

kegg
ID pmum:103330439
description uncharacterized LOC103330439
nr
ID XP_008231245.1
description PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A087GPJ8
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G160500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30832: 27113-27512 , PASA_asmbl_30833: 28390-28619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002947_020 0.0 - - PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
2 Hb_000334_180 0.2359077414 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
3 Hb_004462_010 0.2377821104 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
4 Hb_000133_070 0.2467465293 - - -
5 Hb_003073_170 0.2525846563 - - -
6 Hb_002666_020 0.261588945 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
7 Hb_034337_010 0.2661081895 - - vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_008778_010 0.2688366412 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_003124_090 0.2690946161 - - hypothetical protein CICLE_v10031194mg [Citrus clementina]
10 Hb_001636_020 0.2759075914 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
11 Hb_008494_050 0.2759232797 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
12 Hb_004724_120 0.2770197618 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
13 Hb_000544_100 0.2772611415 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
14 Hb_001524_090 0.2815683116 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
15 Hb_000733_210 0.2882692666 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
16 Hb_097968_010 0.3017488664 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
17 Hb_000108_170 0.3062229306 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
18 Hb_134469_010 0.312238563 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
19 Hb_027445_050 0.315442121 - - PREDICTED: titin isoform X13 [Jatropha curcas]
20 Hb_007785_010 0.3190865197 - - glutathione peroxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002947_020 Hb_002947_020 Hb_000334_180 Hb_000334_180 Hb_002947_020--Hb_000334_180 Hb_004462_010 Hb_004462_010 Hb_002947_020--Hb_004462_010 Hb_000133_070 Hb_000133_070 Hb_002947_020--Hb_000133_070 Hb_003073_170 Hb_003073_170 Hb_002947_020--Hb_003073_170 Hb_002666_020 Hb_002666_020 Hb_002947_020--Hb_002666_020 Hb_034337_010 Hb_034337_010 Hb_002947_020--Hb_034337_010 Hb_008778_010 Hb_008778_010 Hb_000334_180--Hb_008778_010 Hb_000566_030 Hb_000566_030 Hb_000334_180--Hb_000566_030 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_002035_080 Hb_002035_080 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_000544_100 Hb_000544_100 Hb_004462_010--Hb_000544_100 Hb_000093_150 Hb_000093_150 Hb_004462_010--Hb_000093_150 Hb_127886_010 Hb_127886_010 Hb_004462_010--Hb_127886_010 Hb_001524_090 Hb_001524_090 Hb_004462_010--Hb_001524_090 Hb_004462_010--Hb_001636_020 Hb_000209_110 Hb_000209_110 Hb_004462_010--Hb_000209_110 Hb_000133_070--Hb_008778_010 Hb_151463_010 Hb_151463_010 Hb_000133_070--Hb_151463_010 Hb_131035_010 Hb_131035_010 Hb_000133_070--Hb_131035_010 Hb_000133_070--Hb_000334_180 Hb_001767_130 Hb_001767_130 Hb_000133_070--Hb_001767_130 Hb_003073_170--Hb_151463_010 Hb_003107_020 Hb_003107_020 Hb_003073_170--Hb_003107_020 Hb_007785_010 Hb_007785_010 Hb_003073_170--Hb_007785_010 Hb_000853_030 Hb_000853_030 Hb_003073_170--Hb_000853_030 Hb_054885_020 Hb_054885_020 Hb_003073_170--Hb_054885_020 Hb_001989_020 Hb_001989_020 Hb_003073_170--Hb_001989_020 Hb_000733_210 Hb_000733_210 Hb_002666_020--Hb_000733_210 Hb_000853_400 Hb_000853_400 Hb_002666_020--Hb_000853_400 Hb_002666_020--Hb_001636_020 Hb_004724_120 Hb_004724_120 Hb_002666_020--Hb_004724_120 Hb_000544_050 Hb_000544_050 Hb_002666_020--Hb_000544_050 Hb_000193_140 Hb_000193_140 Hb_002666_020--Hb_000193_140 Hb_001544_080 Hb_001544_080 Hb_034337_010--Hb_001544_080 Hb_029977_050 Hb_029977_050 Hb_034337_010--Hb_029977_050 Hb_000413_230 Hb_000413_230 Hb_034337_010--Hb_000413_230 Hb_101089_010 Hb_101089_010 Hb_034337_010--Hb_101089_010 Hb_165130_010 Hb_165130_010 Hb_034337_010--Hb_165130_010 Hb_011716_110 Hb_011716_110 Hb_034337_010--Hb_011716_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233156 0.0275118 0 0.0470202 0.0201642 0.0364372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0352568 0.0889028 0

CAGE analysis