Hb_002035_080

Information

Type -
Description -
Location Contig2035: 98930-99862
Sequence    

Annotation

kegg
ID rcu:RCOM_1471060
description pentatricopeptide repeat-containing protein, putative
nr
ID CBI27276.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9M065
description Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=2 SV=1
trembl
ID J3LQZ5
description Uncharacterized protein OS=Oryza brachyantha GN=OB03G34710 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at3g14330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20850: 99807-100510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_080 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000193_140 0.1733997524 - - conserved hypothetical protein [Ricinus communis]
3 Hb_135442_010 0.1799948465 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_002035_090 0.1841968618 - - -
5 Hb_000334_180 0.1922444762 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
6 Hb_133748_010 0.2080995768 - - -
7 Hb_008778_010 0.2083774145 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_141547_010 0.2098730443 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
9 Hb_000206_190 0.2149400837 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
10 Hb_007603_010 0.2149799836 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000832_220 0.2176364426 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
12 Hb_040255_010 0.2181710096 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
13 Hb_007904_080 0.2186553425 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
14 Hb_003939_040 0.2199155513 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
15 Hb_004097_120 0.2215873327 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_002375_110 0.2242663405 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
17 Hb_183443_010 0.2254668128 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
18 Hb_001221_140 0.2265478929 - - DNA binding protein, putative [Ricinus communis]
19 Hb_002863_120 0.2278382362 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
20 Hb_003073_170 0.2300127321 - - -

Gene co-expression network

sample Hb_002035_080 Hb_002035_080 Hb_000193_140 Hb_000193_140 Hb_002035_080--Hb_000193_140 Hb_135442_010 Hb_135442_010 Hb_002035_080--Hb_135442_010 Hb_002035_090 Hb_002035_090 Hb_002035_080--Hb_002035_090 Hb_000334_180 Hb_000334_180 Hb_002035_080--Hb_000334_180 Hb_133748_010 Hb_133748_010 Hb_002035_080--Hb_133748_010 Hb_008778_010 Hb_008778_010 Hb_002035_080--Hb_008778_010 Hb_010427_010 Hb_010427_010 Hb_000193_140--Hb_010427_010 Hb_007064_010 Hb_007064_010 Hb_000193_140--Hb_007064_010 Hb_000189_110 Hb_000189_110 Hb_000193_140--Hb_000189_110 Hb_090855_010 Hb_090855_010 Hb_000193_140--Hb_090855_010 Hb_004137_060 Hb_004137_060 Hb_000193_140--Hb_004137_060 Hb_000574_070 Hb_000574_070 Hb_000193_140--Hb_000574_070 Hb_000206_190 Hb_000206_190 Hb_135442_010--Hb_000206_190 Hb_003157_030 Hb_003157_030 Hb_135442_010--Hb_003157_030 Hb_135442_010--Hb_000193_140 Hb_141547_010 Hb_141547_010 Hb_135442_010--Hb_141547_010 Hb_007603_010 Hb_007603_010 Hb_135442_010--Hb_007603_010 Hb_006615_100 Hb_006615_100 Hb_002035_090--Hb_006615_100 Hb_007603_020 Hb_007603_020 Hb_002035_090--Hb_007603_020 Hb_026206_020 Hb_026206_020 Hb_002035_090--Hb_026206_020 Hb_007680_020 Hb_007680_020 Hb_002035_090--Hb_007680_020 Hb_000997_410 Hb_000997_410 Hb_002035_090--Hb_000997_410 Hb_000334_180--Hb_008778_010 Hb_000566_030 Hb_000566_030 Hb_000334_180--Hb_000566_030 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_133748_010--Hb_002035_090 Hb_002863_100 Hb_002863_100 Hb_133748_010--Hb_002863_100 Hb_000098_020 Hb_000098_020 Hb_133748_010--Hb_000098_020 Hb_010531_050 Hb_010531_050 Hb_133748_010--Hb_010531_050 Hb_001622_010 Hb_001622_010 Hb_133748_010--Hb_001622_010 Hb_004899_060 Hb_004899_060 Hb_008778_010--Hb_004899_060 Hb_005976_050 Hb_005976_050 Hb_008778_010--Hb_005976_050 Hb_089206_010 Hb_089206_010 Hb_008778_010--Hb_089206_010 Hb_008778_010--Hb_000566_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41154 1.14917 0.149915 0.915462 0.857001 1.4956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.955816 0.823312 0.442448

CAGE analysis