Hb_000566_030

Information

Type -
Description -
Location Contig566: 24893-28955
Sequence    

Annotation

kegg
ID rcu:RCOM_1079010
description serine/threonine-protein kinase cx32, putative (EC:2.7.12.2)
nr
ID XP_002514879.1
description serine/threonine-protein kinase cx32, putative [Ricinus communis]
swissprot
ID P27450
description Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2
trembl
ID B9RMB0
description Serine/threonine-protein kinase cx32, putative OS=Ricinus communis GN=RCOM_1079010 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49036: 24769-29025 , PASA_asmbl_49037: 28322-28532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_030 0.0 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
2 Hb_001781_020 0.1381755174 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_001021_070 0.1705164021 - - unnamed protein product [Vitis vinifera]
4 Hb_001221_140 0.1767859355 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000334_180 0.1794173371 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
6 Hb_000366_200 0.1806316182 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
7 Hb_004411_030 0.1859877917 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
8 Hb_001646_020 0.1868460431 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
9 Hb_183443_010 0.1882728388 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
10 Hb_000031_110 0.1884135041 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
11 Hb_001006_340 0.1888005964 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
12 Hb_021510_010 0.1899209752 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
13 Hb_003471_020 0.1922476952 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
14 Hb_001821_150 0.1939167543 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
15 Hb_003939_040 0.1951197701 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
16 Hb_001437_140 0.1957539859 - - -
17 Hb_031527_080 0.1992248274 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
18 Hb_006816_230 0.2027565531 - - protein disulfide isomerase, putative [Ricinus communis]
19 Hb_000159_100 0.2027735757 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
20 Hb_000161_210 0.2030278461 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]

Gene co-expression network

sample Hb_000566_030 Hb_000566_030 Hb_001781_020 Hb_001781_020 Hb_000566_030--Hb_001781_020 Hb_001021_070 Hb_001021_070 Hb_000566_030--Hb_001021_070 Hb_001221_140 Hb_001221_140 Hb_000566_030--Hb_001221_140 Hb_000334_180 Hb_000334_180 Hb_000566_030--Hb_000334_180 Hb_000366_200 Hb_000366_200 Hb_000566_030--Hb_000366_200 Hb_004411_030 Hb_004411_030 Hb_000566_030--Hb_004411_030 Hb_002027_190 Hb_002027_190 Hb_001781_020--Hb_002027_190 Hb_000649_060 Hb_000649_060 Hb_001781_020--Hb_000649_060 Hb_004019_120 Hb_004019_120 Hb_001781_020--Hb_004019_120 Hb_001781_020--Hb_004411_030 Hb_103684_010 Hb_103684_010 Hb_001781_020--Hb_103684_010 Hb_041327_010 Hb_041327_010 Hb_001781_020--Hb_041327_010 Hb_001646_020 Hb_001646_020 Hb_001021_070--Hb_001646_020 Hb_000479_110 Hb_000479_110 Hb_001021_070--Hb_000479_110 Hb_052135_020 Hb_052135_020 Hb_001021_070--Hb_052135_020 Hb_002687_060 Hb_002687_060 Hb_001021_070--Hb_002687_060 Hb_005298_020 Hb_005298_020 Hb_001021_070--Hb_005298_020 Hb_022092_010 Hb_022092_010 Hb_001021_070--Hb_022092_010 Hb_003939_040 Hb_003939_040 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_000077_220 Hb_000077_220 Hb_001221_140--Hb_000077_220 Hb_001882_130 Hb_001882_130 Hb_001221_140--Hb_001882_130 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020 Hb_008778_010 Hb_008778_010 Hb_000334_180--Hb_008778_010 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_002035_080 Hb_002035_080 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_002026_150 Hb_002026_150 Hb_000366_200--Hb_002026_150 Hb_000031_110 Hb_000031_110 Hb_000366_200--Hb_000031_110 Hb_000352_300 Hb_000352_300 Hb_000366_200--Hb_000352_300 Hb_002169_050 Hb_002169_050 Hb_000366_200--Hb_002169_050 Hb_010174_040 Hb_010174_040 Hb_000366_200--Hb_010174_040 Hb_002909_140 Hb_002909_140 Hb_000366_200--Hb_002909_140 Hb_004411_030--Hb_041327_010 Hb_000037_220 Hb_000037_220 Hb_004411_030--Hb_000037_220 Hb_001754_040 Hb_001754_040 Hb_004411_030--Hb_001754_040 Hb_140049_080 Hb_140049_080 Hb_004411_030--Hb_140049_080 Hb_000003_100 Hb_000003_100 Hb_004411_030--Hb_000003_100 Hb_019840_030 Hb_019840_030 Hb_004411_030--Hb_019840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29211 4.11056 3.84695 8.09199 5.21982 4.88733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.255007 0.515842 8.88854 10.7627 4.35029

CAGE analysis