Hb_005539_250

Information

Type -
Description -
Location Contig5539: 182394-183047
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48390: 182224-182495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_250 0.0 - - -
2 Hb_058328_010 0.1902308789 - - JHL06B08.2 [Jatropha curcas]
3 Hb_003124_090 0.2757130202 - - hypothetical protein CICLE_v10031194mg [Citrus clementina]
4 Hb_008494_050 0.2790572632 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
5 Hb_003992_230 0.3027942045 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
6 Hb_000302_090 0.3075010452 - - PREDICTED: protein SGT1 homolog [Prunus mume]
7 Hb_000364_200 0.3102180775 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_004462_010 0.3143798569 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
9 Hb_005539_170 0.3145232752 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
10 Hb_002232_090 0.3153143321 - - STS14 protein precursor, putative [Ricinus communis]
11 Hb_005218_040 0.3251750539 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
12 Hb_003025_010 0.3255522035 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
13 Hb_001691_030 0.3295033141 - - lipoxygenase, putative [Ricinus communis]
14 Hb_096811_010 0.3301874568 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
15 Hb_006054_020 0.3395698218 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002947_020 0.3435985849 - - PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
17 Hb_028995_030 0.3436948666 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
18 Hb_000544_100 0.3446123888 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
19 Hb_001946_030 0.3463771375 - - grr1, plant, putative [Ricinus communis]
20 Hb_004976_050 0.3467424689 - - -

Gene co-expression network

sample Hb_005539_250 Hb_005539_250 Hb_058328_010 Hb_058328_010 Hb_005539_250--Hb_058328_010 Hb_003124_090 Hb_003124_090 Hb_005539_250--Hb_003124_090 Hb_008494_050 Hb_008494_050 Hb_005539_250--Hb_008494_050 Hb_003992_230 Hb_003992_230 Hb_005539_250--Hb_003992_230 Hb_000302_090 Hb_000302_090 Hb_005539_250--Hb_000302_090 Hb_000364_200 Hb_000364_200 Hb_005539_250--Hb_000364_200 Hb_001390_030 Hb_001390_030 Hb_058328_010--Hb_001390_030 Hb_000157_130 Hb_000157_130 Hb_058328_010--Hb_000157_130 Hb_004976_050 Hb_004976_050 Hb_058328_010--Hb_004976_050 Hb_003073_180 Hb_003073_180 Hb_058328_010--Hb_003073_180 Hb_004462_010 Hb_004462_010 Hb_058328_010--Hb_004462_010 Hb_028995_030 Hb_028995_030 Hb_003124_090--Hb_028995_030 Hb_002947_020 Hb_002947_020 Hb_003124_090--Hb_002947_020 Hb_000544_100 Hb_000544_100 Hb_003124_090--Hb_000544_100 Hb_001538_170 Hb_001538_170 Hb_003124_090--Hb_001538_170 Hb_003124_090--Hb_004462_010 Hb_000566_030 Hb_000566_030 Hb_008494_050--Hb_000566_030 Hb_000853_400 Hb_000853_400 Hb_008494_050--Hb_000853_400 Hb_000334_180 Hb_000334_180 Hb_008494_050--Hb_000334_180 Hb_002666_020 Hb_002666_020 Hb_008494_050--Hb_002666_020 Hb_007590_070 Hb_007590_070 Hb_008494_050--Hb_007590_070 Hb_004103_030 Hb_004103_030 Hb_008494_050--Hb_004103_030 Hb_003992_230--Hb_000302_090 Hb_002232_090 Hb_002232_090 Hb_003992_230--Hb_002232_090 Hb_011437_030 Hb_011437_030 Hb_003992_230--Hb_011437_030 Hb_046417_010 Hb_046417_010 Hb_003992_230--Hb_046417_010 Hb_012754_020 Hb_012754_020 Hb_003992_230--Hb_012754_020 Hb_003185_090 Hb_003185_090 Hb_003992_230--Hb_003185_090 Hb_002284_180 Hb_002284_180 Hb_000302_090--Hb_002284_180 Hb_000302_090--Hb_011437_030 Hb_001623_090 Hb_001623_090 Hb_000302_090--Hb_001623_090 Hb_000302_090--Hb_003185_090 Hb_000302_090--Hb_012754_020 Hb_011214_120 Hb_011214_120 Hb_000364_200--Hb_011214_120 Hb_000589_210 Hb_000589_210 Hb_000364_200--Hb_000589_210 Hb_014834_020 Hb_014834_020 Hb_000364_200--Hb_014834_020 Hb_000915_070 Hb_000915_070 Hb_000364_200--Hb_000915_070 Hb_001959_030 Hb_001959_030 Hb_000364_200--Hb_001959_030 Hb_000056_220 Hb_000056_220 Hb_000364_200--Hb_000056_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0890216 0.0597269 0.110937 0.0899286 0 0.124603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.210667 0.644389 0

CAGE analysis