Hb_000157_130

Information

Type -
Description -
Location Contig157: 112826-114844
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06260g
description POPTRDRAFT_202947; hypothetical protein
nr
ID XP_011025485.1
description PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
swissprot
ID P51104
description Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1
trembl
ID B9HNS8
description Putative cinnamoyl-CoA reductase family protein OS=Populus trichocarpa GN=POPTR_0009s06260g PE=4 SV=2
Gene Ontology
ID GO:0045552
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_130 0.0 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
2 Hb_003073_180 0.218496723 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_080147_100 0.2269270703 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
4 Hb_001390_030 0.2294679448 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
5 Hb_003813_120 0.2322555494 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000805_320 0.2347832809 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
7 Hb_004976_050 0.2353674874 - - -
8 Hb_001206_090 0.236295691 - - pyruvate decarboxylase [Hevea brasiliensis]
9 Hb_007943_160 0.2398918602 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
10 Hb_138710_010 0.2429038038 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
11 Hb_003428_100 0.2485634832 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_000645_210 0.2528952632 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
13 Hb_127886_010 0.2536931991 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
14 Hb_182680_010 0.2635112601 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_000209_110 0.2635650599 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
16 Hb_000343_100 0.2655248269 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
17 Hb_004462_010 0.2683555904 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
18 Hb_006717_070 0.2690193716 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
19 Hb_003226_120 0.2703618522 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004129_050 0.2745381444 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000157_130 Hb_000157_130 Hb_003073_180 Hb_003073_180 Hb_000157_130--Hb_003073_180 Hb_080147_100 Hb_080147_100 Hb_000157_130--Hb_080147_100 Hb_001390_030 Hb_001390_030 Hb_000157_130--Hb_001390_030 Hb_003813_120 Hb_003813_120 Hb_000157_130--Hb_003813_120 Hb_000805_320 Hb_000805_320 Hb_000157_130--Hb_000805_320 Hb_004976_050 Hb_004976_050 Hb_000157_130--Hb_004976_050 Hb_002407_080 Hb_002407_080 Hb_003073_180--Hb_002407_080 Hb_003073_180--Hb_000805_320 Hb_000209_110 Hb_000209_110 Hb_003073_180--Hb_000209_110 Hb_001258_060 Hb_001258_060 Hb_003073_180--Hb_001258_060 Hb_003073_180--Hb_080147_100 Hb_006586_030 Hb_006586_030 Hb_003073_180--Hb_006586_030 Hb_080147_100--Hb_000805_320 Hb_105328_030 Hb_105328_030 Hb_080147_100--Hb_105328_030 Hb_094437_060 Hb_094437_060 Hb_080147_100--Hb_094437_060 Hb_001504_120 Hb_001504_120 Hb_080147_100--Hb_001504_120 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_138710_010 Hb_138710_010 Hb_001390_030--Hb_138710_010 Hb_011633_040 Hb_011633_040 Hb_001390_030--Hb_011633_040 Hb_001390_030--Hb_003813_120 Hb_012545_090 Hb_012545_090 Hb_001390_030--Hb_012545_090 Hb_029921_030 Hb_029921_030 Hb_001390_030--Hb_029921_030 Hb_127886_010 Hb_127886_010 Hb_001390_030--Hb_127886_010 Hb_000347_110 Hb_000347_110 Hb_003813_120--Hb_000347_110 Hb_003626_040 Hb_003626_040 Hb_003813_120--Hb_003626_040 Hb_006717_070 Hb_006717_070 Hb_003813_120--Hb_006717_070 Hb_000227_040 Hb_000227_040 Hb_003813_120--Hb_000227_040 Hb_000702_060 Hb_000702_060 Hb_003813_120--Hb_000702_060 Hb_001500_070 Hb_001500_070 Hb_003813_120--Hb_001500_070 Hb_000805_320--Hb_094437_060 Hb_004242_190 Hb_004242_190 Hb_000805_320--Hb_004242_190 Hb_105602_010 Hb_105602_010 Hb_000805_320--Hb_105602_010 Hb_000805_320--Hb_001258_060 Hb_014894_010 Hb_014894_010 Hb_000805_320--Hb_014894_010 Hb_000011_290 Hb_000011_290 Hb_004976_050--Hb_000011_290 Hb_004976_050--Hb_138710_010 Hb_004976_050--Hb_094437_060 Hb_002849_090 Hb_002849_090 Hb_004976_050--Hb_002849_090 Hb_000879_190 Hb_000879_190 Hb_004976_050--Hb_000879_190 Hb_158092_060 Hb_158092_060 Hb_004976_050--Hb_158092_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165064 0.477919 0.451735 0.465752 0.380838 0.600648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0815474 1.18671 0.238608 4.6 0.199085

CAGE analysis