Hb_004103_030

Information

Type -
Description -
Location Contig4103: 13830-17923
Sequence    

Annotation

kegg
ID rcu:RCOM_0497300
description hypothetical protein
nr
ID XP_002527852.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID B9SPD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0497300 PE=4 SV=1
Gene Ontology
ID GO:0000166
description e3 ubiquitin-protein ligase upl5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004103_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_097968_010 0.1688877857 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
3 Hb_183443_010 0.2134396077 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
4 Hb_000512_070 0.2149288207 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
5 Hb_001242_090 0.2372058322 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
6 Hb_000000_100 0.2383455025 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
7 Hb_007590_070 0.2414018408 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
8 Hb_004881_100 0.2427183357 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
9 Hb_000251_090 0.2463040204 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
10 Hb_008494_050 0.2468281323 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
11 Hb_012522_010 0.2500981247 - - hypothetical protein VITISV_003261 [Vitis vinifera]
12 Hb_001506_010 0.2534161709 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
13 Hb_090855_010 0.2632694984 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_003688_160 0.26336963 - - Presenilin-like family protein [Populus trichocarpa]
15 Hb_008778_010 0.2644629261 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_024404_010 0.2646387915 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
17 Hb_003881_050 0.2648294216 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
18 Hb_015707_010 0.2670467363 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
19 Hb_004899_060 0.2700676534 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
20 Hb_089206_010 0.2728756764 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_004103_030 Hb_004103_030 Hb_097968_010 Hb_097968_010 Hb_004103_030--Hb_097968_010 Hb_183443_010 Hb_183443_010 Hb_004103_030--Hb_183443_010 Hb_000512_070 Hb_000512_070 Hb_004103_030--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004103_030--Hb_001242_090 Hb_000000_100 Hb_000000_100 Hb_004103_030--Hb_000000_100 Hb_007590_070 Hb_007590_070 Hb_004103_030--Hb_007590_070 Hb_015707_010 Hb_015707_010 Hb_097968_010--Hb_015707_010 Hb_025457_010 Hb_025457_010 Hb_097968_010--Hb_025457_010 Hb_002028_100 Hb_002028_100 Hb_097968_010--Hb_002028_100 Hb_024505_050 Hb_024505_050 Hb_097968_010--Hb_024505_050 Hb_009421_010 Hb_009421_010 Hb_097968_010--Hb_009421_010 Hb_089206_010 Hb_089206_010 Hb_183443_010--Hb_089206_010 Hb_146339_010 Hb_146339_010 Hb_183443_010--Hb_146339_010 Hb_063943_010 Hb_063943_010 Hb_183443_010--Hb_063943_010 Hb_000566_030 Hb_000566_030 Hb_183443_010--Hb_000566_030 Hb_000334_180 Hb_000334_180 Hb_183443_010--Hb_000334_180 Hb_174473_010 Hb_174473_010 Hb_183443_010--Hb_174473_010 Hb_006268_020 Hb_006268_020 Hb_000512_070--Hb_006268_020 Hb_130194_010 Hb_130194_010 Hb_000512_070--Hb_130194_010 Hb_032496_010 Hb_032496_010 Hb_000512_070--Hb_032496_010 Hb_004881_100 Hb_004881_100 Hb_000512_070--Hb_004881_100 Hb_000251_090 Hb_000251_090 Hb_000512_070--Hb_000251_090 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_000304_060 Hb_000304_060 Hb_000000_100--Hb_000304_060 Hb_001976_080 Hb_001976_080 Hb_000000_100--Hb_001976_080 Hb_008494_050 Hb_008494_050 Hb_000000_100--Hb_008494_050 Hb_008511_010 Hb_008511_010 Hb_000000_100--Hb_008511_010 Hb_000000_100--Hb_000251_090 Hb_134469_010 Hb_134469_010 Hb_007590_070--Hb_134469_010 Hb_090855_010 Hb_090855_010 Hb_007590_070--Hb_090855_010 Hb_010874_020 Hb_010874_020 Hb_007590_070--Hb_010874_020 Hb_000733_210 Hb_000733_210 Hb_007590_070--Hb_000733_210 Hb_000193_140 Hb_000193_140 Hb_007590_070--Hb_000193_140 Hb_010427_010 Hb_010427_010 Hb_007590_070--Hb_010427_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29697 0.724627 0.423502 0.465448 1.65707 1.53146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 4.18553 3.70274 0.510169

CAGE analysis