Hb_000304_060

Information

Type transcription factor
Description TF Family: GRAS
Location Contig304: 25976-33097
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15360g
description POPTRDRAFT_769815; hypothetical protein
nr
ID XP_002316033.1
description hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
swissprot
ID Q8GXW1
description DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2
trembl
ID B9HWZ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32069: 31272-31501 , PASA_asmbl_32070: 33517-36340
cDNA
(Sanger)
(ID:Location)		 047_C20.ab1: 34085-36293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_060 0.0 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
2 Hb_163837_010 0.2429881512 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
3 Hb_000000_100 0.24373526 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
4 Hb_012522_010 0.2454728707 - - hypothetical protein VITISV_003261 [Vitis vinifera]
5 Hb_012760_020 0.2691224179 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
6 Hb_000512_070 0.2693788093 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
7 Hb_000251_090 0.2802933142 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
8 Hb_000637_120 0.280452409 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
9 Hb_161072_010 0.2812523778 - - -
10 Hb_005699_080 0.2877090207 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
11 Hb_074108_010 0.288646596 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_001976_080 0.2953828997 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
13 Hb_004103_030 0.3032606534 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004881_100 0.306171528 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
15 Hb_000980_070 0.3153444836 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
16 Hb_138652_010 0.3191900931 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
17 Hb_000010_100 0.3198913951 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
18 Hb_000990_060 0.3242706702 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
19 Hb_026048_060 0.3246976377 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_011437_030 0.3257261205 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]

Gene co-expression network

sample Hb_000304_060 Hb_000304_060 Hb_163837_010 Hb_163837_010 Hb_000304_060--Hb_163837_010 Hb_000000_100 Hb_000000_100 Hb_000304_060--Hb_000000_100 Hb_012522_010 Hb_012522_010 Hb_000304_060--Hb_012522_010 Hb_012760_020 Hb_012760_020 Hb_000304_060--Hb_012760_020 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000251_090 Hb_000251_090 Hb_000304_060--Hb_000251_090 Hb_163837_010--Hb_012522_010 Hb_161072_010 Hb_161072_010 Hb_163837_010--Hb_161072_010 Hb_000045_150 Hb_000045_150 Hb_163837_010--Hb_000045_150 Hb_000637_120 Hb_000637_120 Hb_163837_010--Hb_000637_120 Hb_163837_010--Hb_012760_020 Hb_004103_030 Hb_004103_030 Hb_000000_100--Hb_004103_030 Hb_001976_080 Hb_001976_080 Hb_000000_100--Hb_001976_080 Hb_008494_050 Hb_008494_050 Hb_000000_100--Hb_008494_050 Hb_008511_010 Hb_008511_010 Hb_000000_100--Hb_008511_010 Hb_000000_100--Hb_000251_090 Hb_012522_010--Hb_012760_020 Hb_012522_010--Hb_004103_030 Hb_001124_040 Hb_001124_040 Hb_012522_010--Hb_001124_040 Hb_012522_010--Hb_000000_100 Hb_000108_170 Hb_000108_170 Hb_012760_020--Hb_000108_170 Hb_000980_070 Hb_000980_070 Hb_012760_020--Hb_000980_070 Hb_012760_020--Hb_000000_100 Hb_006268_020 Hb_006268_020 Hb_000512_070--Hb_006268_020 Hb_000512_070--Hb_004103_030 Hb_130194_010 Hb_130194_010 Hb_000512_070--Hb_130194_010 Hb_032496_010 Hb_032496_010 Hb_000512_070--Hb_032496_010 Hb_004881_100 Hb_004881_100 Hb_000512_070--Hb_004881_100 Hb_000512_070--Hb_000251_090 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293826 0.592076 0.282915 0.0703834 0.414828 0.0351736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0126602 0.0199258 1.71869 0.631806 0.0213036

CAGE analysis