Hb_000108_170

Information

Type -
Description -
Location Contig108: 148249-151568
Sequence    

Annotation

kegg
ID tcc:TCM_040027
description Lysine decarboxylase family protein
nr
ID XP_012067133.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
swissprot
ID Q8RUN2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1
trembl
ID A0A067L0Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01885 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02393: 151266-151445 , PASA_asmbl_02394: 150866-151518 , PASA_asmbl_02395: 151564-151667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_170 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
2 Hb_007676_020 0.2360758509 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
3 Hb_011512_130 0.2381224102 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
4 Hb_005841_080 0.2400184644 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
5 Hb_008066_070 0.2441522224 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
6 Hb_012760_020 0.2451314823 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
7 Hb_000733_210 0.246165723 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
8 Hb_002666_020 0.2511665831 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
9 Hb_004462_010 0.2535394384 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
10 Hb_034337_010 0.2541970152 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_020805_170 0.2549797941 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
12 Hb_008494_050 0.2554334849 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_005539_170 0.2557183596 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
14 Hb_000049_090 0.2585003111 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
15 Hb_000140_410 0.2636148266 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
16 Hb_127886_010 0.265407293 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_000022_180 0.2654775037 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_000928_040 0.2661979738 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001114_070 0.2668944475 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
20 Hb_000067_010 0.2682922757 - - hypothetical protein B456_002G147500 [Gossypium raimondii]

Gene co-expression network

sample Hb_000108_170 Hb_000108_170 Hb_007676_020 Hb_007676_020 Hb_000108_170--Hb_007676_020 Hb_011512_130 Hb_011512_130 Hb_000108_170--Hb_011512_130 Hb_005841_080 Hb_005841_080 Hb_000108_170--Hb_005841_080 Hb_008066_070 Hb_008066_070 Hb_000108_170--Hb_008066_070 Hb_012760_020 Hb_012760_020 Hb_000108_170--Hb_012760_020 Hb_000733_210 Hb_000733_210 Hb_000108_170--Hb_000733_210 Hb_001114_070 Hb_001114_070 Hb_007676_020--Hb_001114_070 Hb_007676_020--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_007676_020--Hb_020805_170 Hb_000084_220 Hb_000084_220 Hb_007676_020--Hb_000084_220 Hb_006573_300 Hb_006573_300 Hb_007676_020--Hb_006573_300 Hb_031862_040 Hb_031862_040 Hb_007676_020--Hb_031862_040 Hb_005550_010 Hb_005550_010 Hb_011512_130--Hb_005550_010 Hb_011512_130--Hb_008066_070 Hb_002631_200 Hb_002631_200 Hb_011512_130--Hb_002631_200 Hb_002217_220 Hb_002217_220 Hb_011512_130--Hb_002217_220 Hb_005433_060 Hb_005433_060 Hb_011512_130--Hb_005433_060 Hb_008221_170 Hb_008221_170 Hb_011512_130--Hb_008221_170 Hb_005157_010 Hb_005157_010 Hb_005841_080--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_005841_080--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_005841_080--Hb_003299_010 Hb_002273_080 Hb_002273_080 Hb_005841_080--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070 Hb_008066_070--Hb_020805_170 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_012522_010 Hb_012522_010 Hb_012760_020--Hb_012522_010 Hb_000980_070 Hb_000980_070 Hb_012760_020--Hb_000980_070 Hb_163837_010 Hb_163837_010 Hb_012760_020--Hb_163837_010 Hb_000304_060 Hb_000304_060 Hb_012760_020--Hb_000304_060 Hb_000000_100 Hb_000000_100 Hb_012760_020--Hb_000000_100 Hb_134469_010 Hb_134469_010 Hb_000733_210--Hb_134469_010 Hb_007590_070 Hb_007590_070 Hb_000733_210--Hb_007590_070 Hb_002666_020 Hb_002666_020 Hb_000733_210--Hb_002666_020 Hb_002007_240 Hb_002007_240 Hb_000733_210--Hb_002007_240 Hb_001427_070 Hb_001427_070 Hb_000733_210--Hb_001427_070 Hb_001636_020 Hb_001636_020 Hb_000733_210--Hb_001636_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0707717 1.08792 0.107279 0.390134 0.105732 0.366123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0647994 0.0509537 0.646972 1.17435 0

CAGE analysis