Hb_012522_010

Information

Type -
Description -
Location Contig12522: 50-2946
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G0934000
description hypothetical protein
nr
ID CAN66129.1
description hypothetical protein VITISV_003261 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID K4DFZ9
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc12g056680.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012522_010 0.0 - - hypothetical protein VITISV_003261 [Vitis vinifera]
2 Hb_012760_020 0.1931386348 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
3 Hb_163837_010 0.2397824309 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
4 Hb_000304_060 0.2454728707 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
5 Hb_004103_030 0.2500981247 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001124_040 0.2795884481 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]
7 Hb_000000_100 0.2860312329 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
8 Hb_097968_010 0.288048739 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
9 Hb_002374_430 0.3010675075 - - conserved hypothetical protein [Ricinus communis]
10 Hb_161072_010 0.3095042137 - - -
11 Hb_000045_150 0.3108187707 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
12 Hb_015707_010 0.3153180028 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
13 Hb_017434_060 0.3176937709 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
14 Hb_000733_210 0.3182579376 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
15 Hb_001506_010 0.3265600146 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_000637_120 0.3333372628 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
17 Hb_004570_030 0.3335690389 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000251_090 0.3336695113 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
19 Hb_000512_070 0.3378933211 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
20 Hb_006083_060 0.3382712599 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_012522_010 Hb_012522_010 Hb_012760_020 Hb_012760_020 Hb_012522_010--Hb_012760_020 Hb_163837_010 Hb_163837_010 Hb_012522_010--Hb_163837_010 Hb_000304_060 Hb_000304_060 Hb_012522_010--Hb_000304_060 Hb_004103_030 Hb_004103_030 Hb_012522_010--Hb_004103_030 Hb_001124_040 Hb_001124_040 Hb_012522_010--Hb_001124_040 Hb_000000_100 Hb_000000_100 Hb_012522_010--Hb_000000_100 Hb_000108_170 Hb_000108_170 Hb_012760_020--Hb_000108_170 Hb_000980_070 Hb_000980_070 Hb_012760_020--Hb_000980_070 Hb_012760_020--Hb_163837_010 Hb_012760_020--Hb_000304_060 Hb_012760_020--Hb_000000_100 Hb_161072_010 Hb_161072_010 Hb_163837_010--Hb_161072_010 Hb_163837_010--Hb_000304_060 Hb_000045_150 Hb_000045_150 Hb_163837_010--Hb_000045_150 Hb_000637_120 Hb_000637_120 Hb_163837_010--Hb_000637_120 Hb_000304_060--Hb_000000_100 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000251_090 Hb_000251_090 Hb_000304_060--Hb_000251_090 Hb_097968_010 Hb_097968_010 Hb_004103_030--Hb_097968_010 Hb_183443_010 Hb_183443_010 Hb_004103_030--Hb_183443_010 Hb_004103_030--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004103_030--Hb_001242_090 Hb_004103_030--Hb_000000_100 Hb_007590_070 Hb_007590_070 Hb_004103_030--Hb_007590_070 Hb_011056_020 Hb_011056_020 Hb_001124_040--Hb_011056_020 Hb_001124_040--Hb_000045_150 Hb_001124_040--Hb_161072_010 Hb_001014_120 Hb_001014_120 Hb_001124_040--Hb_001014_120 Hb_001008_040 Hb_001008_040 Hb_001124_040--Hb_001008_040 Hb_001976_080 Hb_001976_080 Hb_000000_100--Hb_001976_080 Hb_008494_050 Hb_008494_050 Hb_000000_100--Hb_008494_050 Hb_008511_010 Hb_008511_010 Hb_000000_100--Hb_008511_010 Hb_000000_100--Hb_000251_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131097 0.0260837 0.00975159 0 0.0262685 0.0130491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0441933 0.0374816 0

CAGE analysis