Hb_001008_040

Information

Type -
Description -
Location Contig1008: 46267-46823
Sequence    

Annotation

kegg
ID rcu:RCOM_0898000
description Late embryogenesis abundant protein D-7, putative
nr
ID XP_002517584.1
description Late embryogenesis abundant protein D-7, putative [Ricinus communis]
swissprot
ID P13939
description Late embryogenesis abundant protein D-7 OS=Gossypium hirsutum PE=2 SV=1
trembl
ID B9RV15
description Late embryogenesis abundant protein D-7, putative OS=Ricinus communis GN=RCOM_0898000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_040 0.0 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
2 Hb_003609_020 0.2470818663 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
3 Hb_008225_070 0.2534437591 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_000045_150 0.2583917333 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
5 Hb_000500_140 0.2613806772 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
6 Hb_000733_210 0.2741282334 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
7 Hb_159921_010 0.2802810885 - - -
8 Hb_004032_420 0.2827999325 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
9 Hb_001124_040 0.2856071115 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]
10 Hb_005539_170 0.2933608748 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
11 Hb_000108_170 0.2933943666 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
12 Hb_000432_060 0.299440919 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000000_100 0.3034530642 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
14 Hb_001014_120 0.3061615425 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
15 Hb_017434_060 0.3104421651 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
16 Hb_001660_020 0.3135922465 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
17 Hb_080952_010 0.3144066808 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
18 Hb_001767_090 0.3167186994 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_000680_050 0.3170595034 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
20 Hb_001338_060 0.3171772582 - - -

Gene co-expression network

sample Hb_001008_040 Hb_001008_040 Hb_003609_020 Hb_003609_020 Hb_001008_040--Hb_003609_020 Hb_008225_070 Hb_008225_070 Hb_001008_040--Hb_008225_070 Hb_000045_150 Hb_000045_150 Hb_001008_040--Hb_000045_150 Hb_000500_140 Hb_000500_140 Hb_001008_040--Hb_000500_140 Hb_000733_210 Hb_000733_210 Hb_001008_040--Hb_000733_210 Hb_159921_010 Hb_159921_010 Hb_001008_040--Hb_159921_010 Hb_004705_140 Hb_004705_140 Hb_003609_020--Hb_004705_140 Hb_003609_020--Hb_000045_150 Hb_003994_060 Hb_003994_060 Hb_003609_020--Hb_003994_060 Hb_073562_010 Hb_073562_010 Hb_003609_020--Hb_073562_010 Hb_024468_020 Hb_024468_020 Hb_003609_020--Hb_024468_020 Hb_001969_090 Hb_001969_090 Hb_003609_020--Hb_001969_090 Hb_000567_080 Hb_000567_080 Hb_008225_070--Hb_000567_080 Hb_004032_420 Hb_004032_420 Hb_008225_070--Hb_004032_420 Hb_003327_040 Hb_003327_040 Hb_008225_070--Hb_003327_040 Hb_000429_180 Hb_000429_180 Hb_008225_070--Hb_000429_180 Hb_012573_080 Hb_012573_080 Hb_008225_070--Hb_012573_080 Hb_000045_150--Hb_004705_140 Hb_008103_120 Hb_008103_120 Hb_000045_150--Hb_008103_120 Hb_000045_150--Hb_073562_010 Hb_004452_010 Hb_004452_010 Hb_000045_150--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_000045_150--Hb_001266_060 Hb_004048_060 Hb_004048_060 Hb_000500_140--Hb_004048_060 Hb_001619_080 Hb_001619_080 Hb_000500_140--Hb_001619_080 Hb_000003_050 Hb_000003_050 Hb_000500_140--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_000500_140--Hb_000723_160 Hb_000436_010 Hb_000436_010 Hb_000500_140--Hb_000436_010 Hb_134469_010 Hb_134469_010 Hb_000733_210--Hb_134469_010 Hb_007590_070 Hb_007590_070 Hb_000733_210--Hb_007590_070 Hb_002666_020 Hb_002666_020 Hb_000733_210--Hb_002666_020 Hb_002007_240 Hb_002007_240 Hb_000733_210--Hb_002007_240 Hb_001427_070 Hb_001427_070 Hb_000733_210--Hb_001427_070 Hb_001636_020 Hb_001636_020 Hb_000733_210--Hb_001636_020 Hb_000853_400 Hb_000853_400 Hb_159921_010--Hb_000853_400 Hb_000432_060 Hb_000432_060 Hb_159921_010--Hb_000432_060 Hb_122408_010 Hb_122408_010 Hb_159921_010--Hb_122408_010 Hb_159921_010--Hb_003327_040 Hb_159921_010--Hb_002666_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449963 2.31686 0.259156 0.0916773 0.0605099 1.92261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151059 0.593297 2.96908 1.83854 0

CAGE analysis