Hb_008225_070

Information

Type -
Description -
Location Contig8225: 34667-40411
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008225_070 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_001008_040 0.2534437591 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
3 Hb_000567_080 0.2871544905 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
4 Hb_004032_420 0.3047746785 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
5 Hb_003327_040 0.3226069286 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
6 Hb_000429_180 0.3274841861 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_012573_080 0.3279632412 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
8 Hb_035398_010 0.3342124874 - - hypothetical protein JCGZ_13029 [Jatropha curcas]
9 Hb_000500_140 0.3358070552 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
10 Hb_000680_050 0.3400041895 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
11 Hb_007380_010 0.3419335235 - - hypothetical protein EUGRSUZ_L00213, partial [Eucalyptus grandis]
12 Hb_000025_520 0.346241396 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
13 Hb_027445_050 0.3508013498 - - PREDICTED: titin isoform X13 [Jatropha curcas]
14 Hb_000061_390 0.3523942773 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
15 Hb_004631_220 0.3533322952 - - -
16 Hb_081745_010 0.3533358721 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
17 Hb_000665_010 0.3573564264 - - hypothetical protein 20 [Hevea brasiliensis]
18 Hb_000049_090 0.3575328853 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
19 Hb_003609_020 0.3581615558 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
20 Hb_012395_220 0.3593077128 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]

Gene co-expression network

sample Hb_008225_070 Hb_008225_070 Hb_001008_040 Hb_001008_040 Hb_008225_070--Hb_001008_040 Hb_000567_080 Hb_000567_080 Hb_008225_070--Hb_000567_080 Hb_004032_420 Hb_004032_420 Hb_008225_070--Hb_004032_420 Hb_003327_040 Hb_003327_040 Hb_008225_070--Hb_003327_040 Hb_000429_180 Hb_000429_180 Hb_008225_070--Hb_000429_180 Hb_012573_080 Hb_012573_080 Hb_008225_070--Hb_012573_080 Hb_003609_020 Hb_003609_020 Hb_001008_040--Hb_003609_020 Hb_000045_150 Hb_000045_150 Hb_001008_040--Hb_000045_150 Hb_000500_140 Hb_000500_140 Hb_001008_040--Hb_000500_140 Hb_000733_210 Hb_000733_210 Hb_001008_040--Hb_000733_210 Hb_159921_010 Hb_159921_010 Hb_001008_040--Hb_159921_010 Hb_000215_410 Hb_000215_410 Hb_000567_080--Hb_000215_410 Hb_129204_060 Hb_129204_060 Hb_000567_080--Hb_129204_060 Hb_000567_080--Hb_004032_420 Hb_002235_240 Hb_002235_240 Hb_000567_080--Hb_002235_240 Hb_005841_080 Hb_005841_080 Hb_000567_080--Hb_005841_080 Hb_131956_010 Hb_131956_010 Hb_000567_080--Hb_131956_010 Hb_001621_070 Hb_001621_070 Hb_004032_420--Hb_001621_070 Hb_005048_020 Hb_005048_020 Hb_004032_420--Hb_005048_020 Hb_031862_040 Hb_031862_040 Hb_004032_420--Hb_031862_040 Hb_000638_210 Hb_000638_210 Hb_004032_420--Hb_000638_210 Hb_004032_420--Hb_000215_410 Hb_007441_050 Hb_007441_050 Hb_003327_040--Hb_007441_050 Hb_003327_040--Hb_159921_010 Hb_122408_010 Hb_122408_010 Hb_003327_040--Hb_122408_010 Hb_040747_010 Hb_040747_010 Hb_003327_040--Hb_040747_010 Hb_008749_060 Hb_008749_060 Hb_003327_040--Hb_008749_060 Hb_149714_010 Hb_149714_010 Hb_003327_040--Hb_149714_010 Hb_002961_060 Hb_002961_060 Hb_000429_180--Hb_002961_060 Hb_000856_180 Hb_000856_180 Hb_000429_180--Hb_000856_180 Hb_001433_140 Hb_001433_140 Hb_000429_180--Hb_001433_140 Hb_001481_160 Hb_001481_160 Hb_000429_180--Hb_001481_160 Hb_001189_110 Hb_001189_110 Hb_000429_180--Hb_001189_110 Hb_004450_050 Hb_004450_050 Hb_000429_180--Hb_004450_050 Hb_000987_140 Hb_000987_140 Hb_012573_080--Hb_000987_140 Hb_042038_020 Hb_042038_020 Hb_012573_080--Hb_042038_020 Hb_001123_290 Hb_001123_290 Hb_012573_080--Hb_001123_290 Hb_000140_070 Hb_000140_070 Hb_012573_080--Hb_000140_070 Hb_164010_070 Hb_164010_070 Hb_012573_080--Hb_164010_070 Hb_001049_030 Hb_001049_030 Hb_012573_080--Hb_001049_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022318 0.119201 0 0.0192676 0 0.0640374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0402069 0.0739718 0.0323436 0

CAGE analysis