Hb_000429_180

Information

Type transcription factor
Description TF Family: mTERF
Location Contig429: 264656-265792
Sequence    

Annotation

kegg
ID rcu:RCOM_0089610
description hypothetical protein
nr
ID XP_002526725.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL56
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0089610 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_180 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_002961_060 0.1566622034 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
3 Hb_000856_180 0.1660546871 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_001433_140 0.1801544457 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
5 Hb_001481_160 0.1816953286 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
6 Hb_001189_110 0.1822561505 - - NAC transcription factor 066 [Jatropha curcas]
7 Hb_004450_050 0.186183942 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
8 Hb_003071_020 0.1909328412 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
9 Hb_011794_040 0.1922968772 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
10 Hb_009627_030 0.1940107325 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
11 Hb_001840_090 0.1959052276 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
12 Hb_008066_070 0.1970794614 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
13 Hb_012753_130 0.2024044348 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000140_410 0.2041699939 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
15 Hb_000905_170 0.204873512 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_001049_020 0.2056153779 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000426_030 0.2110945357 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
18 Hb_003211_010 0.212924024 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
19 Hb_005188_030 0.2135485722 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000126_110 0.2135620813 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_000429_180 Hb_000429_180 Hb_002961_060 Hb_002961_060 Hb_000429_180--Hb_002961_060 Hb_000856_180 Hb_000856_180 Hb_000429_180--Hb_000856_180 Hb_001433_140 Hb_001433_140 Hb_000429_180--Hb_001433_140 Hb_001481_160 Hb_001481_160 Hb_000429_180--Hb_001481_160 Hb_001189_110 Hb_001189_110 Hb_000429_180--Hb_001189_110 Hb_004450_050 Hb_004450_050 Hb_000429_180--Hb_004450_050 Hb_170487_020 Hb_170487_020 Hb_002961_060--Hb_170487_020 Hb_074715_010 Hb_074715_010 Hb_002961_060--Hb_074715_010 Hb_005048_130 Hb_005048_130 Hb_002961_060--Hb_005048_130 Hb_004143_040 Hb_004143_040 Hb_002961_060--Hb_004143_040 Hb_009564_030 Hb_009564_030 Hb_002961_060--Hb_009564_030 Hb_000227_240 Hb_000227_240 Hb_002961_060--Hb_000227_240 Hb_003071_020 Hb_003071_020 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000009_330 Hb_000009_330 Hb_000856_180--Hb_000009_330 Hb_001794_060 Hb_001794_060 Hb_001433_140--Hb_001794_060 Hb_008511_100 Hb_008511_100 Hb_001433_140--Hb_008511_100 Hb_002639_100 Hb_002639_100 Hb_001433_140--Hb_002639_100 Hb_008066_070 Hb_008066_070 Hb_001433_140--Hb_008066_070 Hb_003747_210 Hb_003747_210 Hb_001433_140--Hb_003747_210 Hb_002097_200 Hb_002097_200 Hb_001433_140--Hb_002097_200 Hb_162150_010 Hb_162150_010 Hb_001481_160--Hb_162150_010 Hb_002693_060 Hb_002693_060 Hb_001481_160--Hb_002693_060 Hb_006698_040 Hb_006698_040 Hb_001481_160--Hb_006698_040 Hb_001160_070 Hb_001160_070 Hb_001481_160--Hb_001160_070 Hb_008221_170 Hb_008221_170 Hb_001481_160--Hb_008221_170 Hb_001481_160--Hb_000856_180 Hb_003442_100 Hb_003442_100 Hb_001189_110--Hb_003442_100 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000426_030 Hb_000426_030 Hb_001189_110--Hb_000426_030 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_000302_260 Hb_000302_260 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130 Hb_001396_110 Hb_001396_110 Hb_004450_050--Hb_001396_110 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_000815_240 Hb_000815_240 Hb_004450_050--Hb_000815_240 Hb_005146_080 Hb_005146_080 Hb_004450_050--Hb_005146_080 Hb_005188_030 Hb_005188_030 Hb_004450_050--Hb_005188_030 Hb_006441_020 Hb_006441_020 Hb_004450_050--Hb_006441_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80003 7.01357 0.810793 5.07286 0.514327 2.73497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29869 3.2689 3.15814 4.82011 0.210751

CAGE analysis