Hb_007441_050

Information

Type -
Description -
Location Contig7441: 32256-33207
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_162323
description hypothetical protein
nr
ID AFK41305.1
description unknown [Medicago truncatula]
swissprot
ID -
description -
trembl
ID I3SM13
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56591: 32997-33169 , PASA_asmbl_56592: 33349-35546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_050 0.0 - - unknown [Medicago truncatula]
2 Hb_000317_130 0.1903854451 - - vacuolar membrane protein pep3, putative [Ricinus communis]
3 Hb_003633_040 0.2296033033 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
4 Hb_019053_010 0.2346823243 - - -
5 Hb_000152_220 0.2348579122 - - acc synthase, putative [Ricinus communis]
6 Hb_051424_010 0.2388595481 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
7 Hb_000082_020 0.2458876608 - - -
8 Hb_070469_010 0.2509792508 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
9 Hb_121467_010 0.251621216 - - tubulin-specific chaperone E, putative [Ricinus communis]
10 Hb_106688_010 0.2519902129 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
11 Hb_008029_020 0.253946837 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
12 Hb_148131_010 0.2539892133 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
13 Hb_112047_010 0.2550783902 - - -
14 Hb_000850_040 0.2576568509 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003371_170 0.2590451906 - - conserved hypothetical protein [Ricinus communis]
16 Hb_169329_010 0.2595887104 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
17 Hb_106415_010 0.2600195976 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
18 Hb_075764_010 0.2611419291 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
19 Hb_077573_010 0.2667518009 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_007083_020 0.2669056769 - - hypothetical protein F775_15403 [Aegilops tauschii]

Gene co-expression network

sample Hb_007441_050 Hb_007441_050 Hb_000317_130 Hb_000317_130 Hb_007441_050--Hb_000317_130 Hb_003633_040 Hb_003633_040 Hb_007441_050--Hb_003633_040 Hb_019053_010 Hb_019053_010 Hb_007441_050--Hb_019053_010 Hb_000152_220 Hb_000152_220 Hb_007441_050--Hb_000152_220 Hb_051424_010 Hb_051424_010 Hb_007441_050--Hb_051424_010 Hb_000082_020 Hb_000082_020 Hb_007441_050--Hb_000082_020 Hb_000317_130--Hb_000082_020 Hb_000098_300 Hb_000098_300 Hb_000317_130--Hb_000098_300 Hb_001222_040 Hb_001222_040 Hb_000317_130--Hb_001222_040 Hb_000317_130--Hb_019053_010 Hb_001810_020 Hb_001810_020 Hb_000317_130--Hb_001810_020 Hb_115107_010 Hb_115107_010 Hb_003633_040--Hb_115107_010 Hb_076875_020 Hb_076875_020 Hb_003633_040--Hb_076875_020 Hb_002110_040 Hb_002110_040 Hb_003633_040--Hb_002110_040 Hb_115477_010 Hb_115477_010 Hb_003633_040--Hb_115477_010 Hb_003633_040--Hb_019053_010 Hb_000850_040 Hb_000850_040 Hb_003633_040--Hb_000850_040 Hb_068014_010 Hb_068014_010 Hb_019053_010--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_019053_010--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_019053_010--Hb_115477_010 Hb_000152_220--Hb_000850_040 Hb_183557_010 Hb_183557_010 Hb_000152_220--Hb_183557_010 Hb_003925_070 Hb_003925_070 Hb_000152_220--Hb_003925_070 Hb_106411_010 Hb_106411_010 Hb_000152_220--Hb_106411_010 Hb_001752_040 Hb_001752_040 Hb_000152_220--Hb_001752_040 Hb_051437_010 Hb_051437_010 Hb_051424_010--Hb_051437_010 Hb_051424_010--Hb_106415_010 Hb_008029_020 Hb_008029_020 Hb_051424_010--Hb_008029_020 Hb_006663_090 Hb_006663_090 Hb_051424_010--Hb_006663_090 Hb_181328_010 Hb_181328_010 Hb_051424_010--Hb_181328_010 Hb_051424_010--Hb_115477_010 Hb_041025_010 Hb_041025_010 Hb_000082_020--Hb_041025_010 Hb_114079_010 Hb_114079_010 Hb_000082_020--Hb_114079_010 Hb_046120_010 Hb_046120_010 Hb_000082_020--Hb_046120_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_000082_020--Hb_183522_010 Hb_000082_020--Hb_106415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11721 0.506987 0.451612 0.948757 0.350306 1.69643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.333867 0.264349 0.360099 0

CAGE analysis