Hb_000317_130

Information

Type -
Description -
Location Contig317: 88905-93450
Sequence    

Annotation

kegg
ID rcu:RCOM_1176410
description vacuolar membrane protein pep3, putative
nr
ID XP_002517993.1
description vacuolar membrane protein pep3, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RW74
description Vacuolar membrane protein pep3, putative OS=Ricinus communis GN=RCOM_1176410 PE=4 SV=1
Gene Ontology
ID GO:0006810
description vacuolar protein sorting-associated protein 18 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_130 0.0 - - vacuolar membrane protein pep3, putative [Ricinus communis]
2 Hb_007441_050 0.1903854451 - - unknown [Medicago truncatula]
3 Hb_000082_020 0.2481074841 - - -
4 Hb_000098_300 0.2611387464 - - -
5 Hb_001222_040 0.2690064848 - - -
6 Hb_019053_010 0.2812928117 - - -
7 Hb_001810_020 0.2845827281 - - -
8 Hb_141296_010 0.2846720263 - - -
9 Hb_041025_010 0.2849813723 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
10 Hb_007083_020 0.2889561052 - - hypothetical protein F775_15403 [Aegilops tauschii]
11 Hb_007527_070 0.2893999142 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
12 Hb_146675_010 0.2910070324 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
13 Hb_148131_010 0.2921229978 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
14 Hb_114079_010 0.2946385542 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
15 Hb_002023_040 0.2962411769 - - -
16 Hb_000679_200 0.3009581746 - - EIN3-binding F box protein 1 [Theobroma cacao]
17 Hb_106688_010 0.3035753996 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
18 Hb_165402_010 0.3038676989 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
19 Hb_183522_010 0.3059661608 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_001708_010 0.3078268381 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]

Gene co-expression network

sample Hb_000317_130 Hb_000317_130 Hb_007441_050 Hb_007441_050 Hb_000317_130--Hb_007441_050 Hb_000082_020 Hb_000082_020 Hb_000317_130--Hb_000082_020 Hb_000098_300 Hb_000098_300 Hb_000317_130--Hb_000098_300 Hb_001222_040 Hb_001222_040 Hb_000317_130--Hb_001222_040 Hb_019053_010 Hb_019053_010 Hb_000317_130--Hb_019053_010 Hb_001810_020 Hb_001810_020 Hb_000317_130--Hb_001810_020 Hb_003633_040 Hb_003633_040 Hb_007441_050--Hb_003633_040 Hb_007441_050--Hb_019053_010 Hb_000152_220 Hb_000152_220 Hb_007441_050--Hb_000152_220 Hb_051424_010 Hb_051424_010 Hb_007441_050--Hb_051424_010 Hb_007441_050--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_000082_020--Hb_041025_010 Hb_114079_010 Hb_114079_010 Hb_000082_020--Hb_114079_010 Hb_046120_010 Hb_046120_010 Hb_000082_020--Hb_046120_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010 Hb_141296_010 Hb_141296_010 Hb_000098_300--Hb_141296_010 Hb_000679_200 Hb_000679_200 Hb_000098_300--Hb_000679_200 Hb_022891_010 Hb_022891_010 Hb_000098_300--Hb_022891_010 Hb_007333_040 Hb_007333_040 Hb_000098_300--Hb_007333_040 Hb_060391_010 Hb_060391_010 Hb_000098_300--Hb_060391_010 Hb_033385_010 Hb_033385_010 Hb_000098_300--Hb_033385_010 Hb_000683_090 Hb_000683_090 Hb_001222_040--Hb_000683_090 Hb_169170_010 Hb_169170_010 Hb_001222_040--Hb_169170_010 Hb_006995_010 Hb_006995_010 Hb_001222_040--Hb_006995_010 Hb_001222_040--Hb_000082_020 Hb_001231_070 Hb_001231_070 Hb_001222_040--Hb_001231_070 Hb_008096_020 Hb_008096_020 Hb_001222_040--Hb_008096_020 Hb_068014_010 Hb_068014_010 Hb_019053_010--Hb_068014_010 Hb_019053_010--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_115477_010 Hb_115477_010 Hb_019053_010--Hb_115477_010 Hb_019053_010--Hb_003633_040 Hb_002023_040 Hb_002023_040 Hb_001810_020--Hb_002023_040 Hb_148658_010 Hb_148658_010 Hb_001810_020--Hb_148658_010 Hb_000066_180 Hb_000066_180 Hb_001810_020--Hb_000066_180 Hb_157968_010 Hb_157968_010 Hb_001810_020--Hb_157968_010 Hb_090545_010 Hb_090545_010 Hb_001810_020--Hb_090545_010 Hb_007416_080 Hb_007416_080 Hb_001810_020--Hb_007416_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0581762 0.125607 0.253189 0.0220285 0.372304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0590331 0.0372173 0.125375 0

CAGE analysis