Hb_122408_010

Information

Type -
Description -
Location Contig122408: 54-650
Sequence    

Annotation

kegg
ID rcu:RCOM_0689930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002520874.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q7XJN6
description Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
trembl
ID B9S4F5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0689930 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at2g40720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122408_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004204_170 0.1817672565 - - synaptosomal associated protein, putative [Ricinus communis]
3 Hb_003050_390 0.1822744187 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
4 Hb_181810_020 0.1865135847 - - -
5 Hb_092408_010 0.1905047459 transcription factor TF Family: TRAF PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
6 Hb_001178_140 0.1942407018 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
7 Hb_000680_050 0.1964242197 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
8 Hb_000856_190 0.1967551814 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
9 Hb_005914_150 0.1971782162 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
10 Hb_000270_510 0.1975005352 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
11 Hb_000230_120 0.1993785247 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
12 Hb_004586_210 0.2005555399 - - transcription factor, putative [Ricinus communis]
13 Hb_000413_010 0.2010384386 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
14 Hb_031862_130 0.2019867422 - - transcription factor, putative [Ricinus communis]
15 Hb_000373_150 0.202533065 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_000069_170 0.2035284392 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
17 Hb_008749_060 0.2049489715 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
18 Hb_001060_110 0.2052092718 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
19 Hb_005228_070 0.2059377138 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
20 Hb_001277_270 0.2059954584 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_122408_010 Hb_122408_010 Hb_004204_170 Hb_004204_170 Hb_122408_010--Hb_004204_170 Hb_003050_390 Hb_003050_390 Hb_122408_010--Hb_003050_390 Hb_181810_020 Hb_181810_020 Hb_122408_010--Hb_181810_020 Hb_092408_010 Hb_092408_010 Hb_122408_010--Hb_092408_010 Hb_001178_140 Hb_001178_140 Hb_122408_010--Hb_001178_140 Hb_000680_050 Hb_000680_050 Hb_122408_010--Hb_000680_050 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270 Hb_000270_510 Hb_000270_510 Hb_003050_390--Hb_000270_510 Hb_000080_150 Hb_000080_150 Hb_003050_390--Hb_000080_150 Hb_000270_520 Hb_000270_520 Hb_003050_390--Hb_000270_520 Hb_001135_130 Hb_001135_130 Hb_003050_390--Hb_001135_130 Hb_003528_010 Hb_003528_010 Hb_003050_390--Hb_003528_010 Hb_003050_390--Hb_004204_170 Hb_000031_150 Hb_000031_150 Hb_181810_020--Hb_000031_150 Hb_181810_020--Hb_003050_390 Hb_002232_100 Hb_002232_100 Hb_181810_020--Hb_002232_100 Hb_000229_040 Hb_000229_040 Hb_181810_020--Hb_000229_040 Hb_000592_080 Hb_000592_080 Hb_181810_020--Hb_000592_080 Hb_143629_210 Hb_143629_210 Hb_181810_020--Hb_143629_210 Hb_008643_200 Hb_008643_200 Hb_092408_010--Hb_008643_200 Hb_000432_090 Hb_000432_090 Hb_092408_010--Hb_000432_090 Hb_013241_010 Hb_013241_010 Hb_092408_010--Hb_013241_010 Hb_092408_010--Hb_000270_510 Hb_000011_400 Hb_000011_400 Hb_092408_010--Hb_000011_400 Hb_001178_140--Hb_000085_100 Hb_000859_060 Hb_000859_060 Hb_001178_140--Hb_000859_060 Hb_000629_010 Hb_000629_010 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001892_020 Hb_001892_020 Hb_001178_140--Hb_001892_020 Hb_168697_010 Hb_168697_010 Hb_000680_050--Hb_168697_010 Hb_001141_390 Hb_001141_390 Hb_000680_050--Hb_001141_390 Hb_048219_010 Hb_048219_010 Hb_000680_050--Hb_048219_010 Hb_012395_220 Hb_012395_220 Hb_000680_050--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_000680_050--Hb_002813_050 Hb_005015_070 Hb_005015_070 Hb_000680_050--Hb_005015_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02601 1.17109 0.792804 0.912732 0.423268 1.47336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.406929 0.799519 2.23568 0.524766 0

CAGE analysis