Hb_092408_010

Information

Type transcription factor
Description TF Family: TRAF
Location Contig92408: 261-881
Sequence    

Annotation

kegg
ID rcu:RCOM_1481430
description Speckle-type POZ protein, putative
nr
ID XP_012088619.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
swissprot
ID O22286
description BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1
trembl
ID B9SDZ9
description Speckle-type POZ protein, putative OS=Ricinus communis GN=RCOM_1481430 PE=4 SV=1
Gene Ontology
ID GO:0005829
description btb poz and math domain-containing protein 3-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092408_010 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
2 Hb_008643_200 0.17941283 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
3 Hb_000432_090 0.1856210982 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_013241_010 0.1896853262 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
5 Hb_122408_010 0.1905047459 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000270_510 0.1924764651 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
7 Hb_000011_400 0.1998630688 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
8 Hb_000126_110 0.2020252799 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
9 Hb_000413_010 0.2054461597 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
10 Hb_005867_090 0.207626177 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
11 Hb_000987_060 0.2077140702 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
12 Hb_004204_170 0.208974583 - - synaptosomal associated protein, putative [Ricinus communis]
13 Hb_004324_400 0.209884196 - - PREDICTED: protein timeless homolog [Jatropha curcas]
14 Hb_001235_170 0.2126277636 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
15 Hb_005146_080 0.2132386712 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
16 Hb_000815_240 0.2133244462 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
17 Hb_000512_010 0.2144754153 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
18 Hb_084490_010 0.2151784973 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
19 Hb_005725_060 0.2152990602 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
20 Hb_000007_180 0.2153673491 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]

Gene co-expression network

sample Hb_092408_010 Hb_092408_010 Hb_008643_200 Hb_008643_200 Hb_092408_010--Hb_008643_200 Hb_000432_090 Hb_000432_090 Hb_092408_010--Hb_000432_090 Hb_013241_010 Hb_013241_010 Hb_092408_010--Hb_013241_010 Hb_122408_010 Hb_122408_010 Hb_092408_010--Hb_122408_010 Hb_000270_510 Hb_000270_510 Hb_092408_010--Hb_000270_510 Hb_000011_400 Hb_000011_400 Hb_092408_010--Hb_000011_400 Hb_187679_010 Hb_187679_010 Hb_008643_200--Hb_187679_010 Hb_001159_110 Hb_001159_110 Hb_008643_200--Hb_001159_110 Hb_000211_030 Hb_000211_030 Hb_008643_200--Hb_000211_030 Hb_005074_030 Hb_005074_030 Hb_008643_200--Hb_005074_030 Hb_009620_020 Hb_009620_020 Hb_008643_200--Hb_009620_020 Hb_000413_010 Hb_000413_010 Hb_008643_200--Hb_000413_010 Hb_000432_090--Hb_013241_010 Hb_010872_070 Hb_010872_070 Hb_000432_090--Hb_010872_070 Hb_000976_280 Hb_000976_280 Hb_000432_090--Hb_000976_280 Hb_000987_060 Hb_000987_060 Hb_000432_090--Hb_000987_060 Hb_002217_020 Hb_002217_020 Hb_000432_090--Hb_002217_020 Hb_001856_200 Hb_001856_200 Hb_000432_090--Hb_001856_200 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_003925_040 Hb_003925_040 Hb_013241_010--Hb_003925_040 Hb_127311_010 Hb_127311_010 Hb_013241_010--Hb_127311_010 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020 Hb_004204_170 Hb_004204_170 Hb_122408_010--Hb_004204_170 Hb_003050_390 Hb_003050_390 Hb_122408_010--Hb_003050_390 Hb_181810_020 Hb_181810_020 Hb_122408_010--Hb_181810_020 Hb_001178_140 Hb_001178_140 Hb_122408_010--Hb_001178_140 Hb_000680_050 Hb_000680_050 Hb_122408_010--Hb_000680_050 Hb_000270_510--Hb_003050_390 Hb_003528_010 Hb_003528_010 Hb_000270_510--Hb_003528_010 Hb_004324_400 Hb_004324_400 Hb_000270_510--Hb_004324_400 Hb_000270_520 Hb_000270_520 Hb_000270_510--Hb_000270_520 Hb_001135_130 Hb_001135_130 Hb_000270_510--Hb_001135_130 Hb_000035_200 Hb_000035_200 Hb_000270_510--Hb_000035_200 Hb_001123_320 Hb_001123_320 Hb_000011_400--Hb_001123_320 Hb_000011_400--Hb_009620_020 Hb_001840_090 Hb_001840_090 Hb_000011_400--Hb_001840_090 Hb_000363_210 Hb_000363_210 Hb_000011_400--Hb_000363_210 Hb_000225_060 Hb_000225_060 Hb_000011_400--Hb_000225_060 Hb_003994_060 Hb_003994_060 Hb_000011_400--Hb_003994_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25698 0.451074 0.313701 0.379191 0.0734274 0.141454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184208 0.144686 0.46895 0.184595 0

CAGE analysis