Hb_008103_120

Information

Type -
Description -
Location Contig8103: 97814-118174
Sequence    

Annotation

kegg
ID cit:102622557
description serine/threonine-protein kinase CBK1-like
nr
ID KDO55439.1
description hypothetical protein CISIN_1g009650mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EJT0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009650mg PE=3 SV=1
Gene Ontology
ID GO:0004697
description serine threonine-protein kinase tricorner isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59242: 97906-98047 , PASA_asmbl_59243: 99726-102042 , PASA_asmbl_59244: 102357-111309 , PASA_asmbl_59245: 116525-117801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_120 0.0 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
2 Hb_003750_080 0.1004404567 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
3 Hb_000291_110 0.1041019171 - - eukaryotic translation initiation factor [Hevea brasiliensis]
4 Hb_093084_060 0.1074610267 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
5 Hb_005306_130 0.1156859791 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_181235_010 0.1188936164 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_000116_480 0.1212242742 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
8 Hb_001956_200 0.1250785775 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
9 Hb_000062_240 0.1252628116 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
10 Hb_004452_010 0.1256951863 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
11 Hb_000406_220 0.1264550972 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
12 Hb_000022_230 0.1267526062 - - hypothetical protein RCOM_0803470 [Ricinus communis]
13 Hb_001584_160 0.1277351535 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
14 Hb_082609_020 0.1307975513 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000386_030 0.131093056 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
16 Hb_005324_010 0.1324926806 - - Chaperone protein dnaJ, putative [Ricinus communis]
17 Hb_000230_080 0.1333648454 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_003777_330 0.1340725227 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
19 Hb_004837_040 0.1340733983 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
20 Hb_007101_170 0.1345254857 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]

Gene co-expression network

sample Hb_008103_120 Hb_008103_120 Hb_003750_080 Hb_003750_080 Hb_008103_120--Hb_003750_080 Hb_000291_110 Hb_000291_110 Hb_008103_120--Hb_000291_110 Hb_093084_060 Hb_093084_060 Hb_008103_120--Hb_093084_060 Hb_005306_130 Hb_005306_130 Hb_008103_120--Hb_005306_130 Hb_181235_010 Hb_181235_010 Hb_008103_120--Hb_181235_010 Hb_000116_480 Hb_000116_480 Hb_008103_120--Hb_000116_480 Hb_010710_010 Hb_010710_010 Hb_003750_080--Hb_010710_010 Hb_003750_080--Hb_000291_110 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_000291_110--Hb_000062_240 Hb_001789_090 Hb_001789_090 Hb_000291_110--Hb_001789_090 Hb_000291_110--Hb_181235_010 Hb_004837_040 Hb_004837_040 Hb_000291_110--Hb_004837_040 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420 Hb_002400_310 Hb_002400_310 Hb_093084_060--Hb_002400_310 Hb_093084_060--Hb_181235_010 Hb_000373_150 Hb_000373_150 Hb_093084_060--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_093084_060--Hb_000125_170 Hb_000487_290 Hb_000487_290 Hb_093084_060--Hb_000487_290 Hb_093084_060--Hb_004837_040 Hb_005324_010 Hb_005324_010 Hb_005306_130--Hb_005324_010 Hb_004734_060 Hb_004734_060 Hb_005306_130--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_005306_130--Hb_033152_080 Hb_000209_020 Hb_000209_020 Hb_005306_130--Hb_000209_020 Hb_000139_240 Hb_000139_240 Hb_005306_130--Hb_000139_240 Hb_000059_210 Hb_000059_210 Hb_005306_130--Hb_000059_210 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_082609_020 Hb_082609_020 Hb_000116_480--Hb_082609_020 Hb_000179_130 Hb_000179_130 Hb_000116_480--Hb_000179_130 Hb_001655_070 Hb_001655_070 Hb_000116_480--Hb_001655_070 Hb_009838_100 Hb_009838_100 Hb_000116_480--Hb_009838_100 Hb_000418_100 Hb_000418_100 Hb_000116_480--Hb_000418_100 Hb_000116_480--Hb_005324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89011 5.34279 1.42516 1.39346 5.40156 7.26817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16468 5.08263 7.55649 6.03664 0.460052

CAGE analysis