Hb_032496_010

Information

Type -
Description -
Location Contig32496: 42541-42993
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10850g
description hypothetical protein
nr
ID XP_006376923.1
description hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUH1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10850g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032496_010 0.0 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
2 Hb_000783_030 0.2169183348 - - tfiif-alpha, putative [Ricinus communis]
3 Hb_000512_070 0.2213033881 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
4 Hb_006268_020 0.2279452622 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
5 Hb_001523_020 0.2535713108 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
6 Hb_130194_010 0.2555706475 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
7 Hb_029888_010 0.2588079784 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
8 Hb_036311_020 0.2633375 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000856_150 0.2693016686 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
10 Hb_001911_060 0.2727040699 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_001188_120 0.2755071929 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
12 Hb_000076_020 0.2806132426 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_008760_010 0.2886993344 - - berberine bridge enzyme [Hevea brasiliensis]
14 Hb_002291_010 0.2909362804 - - ring finger protein, putative [Ricinus communis]
15 Hb_000203_260 0.2950806318 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
16 Hb_001304_120 0.2961958846 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
17 Hb_001971_060 0.299850277 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
18 Hb_001222_050 0.3013475374 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
19 Hb_007747_140 0.3019431695 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
20 Hb_007199_010 0.3058768877 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]

Gene co-expression network

sample Hb_032496_010 Hb_032496_010 Hb_000783_030 Hb_000783_030 Hb_032496_010--Hb_000783_030 Hb_000512_070 Hb_000512_070 Hb_032496_010--Hb_000512_070 Hb_006268_020 Hb_006268_020 Hb_032496_010--Hb_006268_020 Hb_001523_020 Hb_001523_020 Hb_032496_010--Hb_001523_020 Hb_130194_010 Hb_130194_010 Hb_032496_010--Hb_130194_010 Hb_029888_010 Hb_029888_010 Hb_032496_010--Hb_029888_010 Hb_082793_010 Hb_082793_010 Hb_000783_030--Hb_082793_010 Hb_002748_030 Hb_002748_030 Hb_000783_030--Hb_002748_030 Hb_000011_290 Hb_000011_290 Hb_000783_030--Hb_000011_290 Hb_002908_060 Hb_002908_060 Hb_000783_030--Hb_002908_060 Hb_000216_030 Hb_000216_030 Hb_000783_030--Hb_000216_030 Hb_000512_070--Hb_006268_020 Hb_004103_030 Hb_004103_030 Hb_000512_070--Hb_004103_030 Hb_000512_070--Hb_130194_010 Hb_004881_100 Hb_004881_100 Hb_000512_070--Hb_004881_100 Hb_000251_090 Hb_000251_090 Hb_000512_070--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000820_050 Hb_000820_050 Hb_006268_020--Hb_000820_050 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_000115_010 Hb_000115_010 Hb_006268_020--Hb_000115_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160 Hb_036311_020 Hb_036311_020 Hb_001523_020--Hb_036311_020 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_000362_120 Hb_000362_120 Hb_001523_020--Hb_000362_120 Hb_001523_020--Hb_130194_010 Hb_037226_010 Hb_037226_010 Hb_130194_010--Hb_037226_010 Hb_002513_030 Hb_002513_030 Hb_130194_010--Hb_002513_030 Hb_130194_010--Hb_036311_020 Hb_000116_430 Hb_000116_430 Hb_029888_010--Hb_000116_430 Hb_130279_010 Hb_130279_010 Hb_029888_010--Hb_130279_010 Hb_001511_070 Hb_001511_070 Hb_029888_010--Hb_001511_070 Hb_009455_020 Hb_009455_020 Hb_029888_010--Hb_009455_020 Hb_070256_010 Hb_070256_010 Hb_029888_010--Hb_070256_010 Hb_000856_150 Hb_000856_150 Hb_029888_010--Hb_000856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.66523 0.116622 0.761746 0.172601 0.444307 0.304257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158655 0.747728 3.71654 4.29394 1.81934

CAGE analysis