Hb_000115_010

Information

Type -
Description -
Location Contig115: 9135-11789
Sequence    

Annotation

kegg
ID rcu:RCOM_0030180
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative (EC:2.1.1.10)
nr
ID XP_002531629.1
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
swissprot
ID A4ZGQ8
description Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1
trembl
ID B9T060
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_0030180 PE=4 SV=1
Gene Ontology
ID GO:0008898
description homocysteine s-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04514: 10082-11304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_010 0.0 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
2 Hb_000820_050 0.1501815606 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
3 Hb_000820_060 0.1714125584 - - -
4 Hb_000032_450 0.1815819059 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
5 Hb_000173_440 0.2088840654 - - YALI0B05280p [Yarrowia lipolytica]
6 Hb_006268_020 0.2098657667 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
7 Hb_001006_220 0.2139813343 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
8 Hb_105328_010 0.2240326718 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
9 Hb_001008_180 0.2243416067 - - -
10 Hb_002527_050 0.2302034824 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
11 Hb_004846_160 0.2395974864 - - -
12 Hb_001045_110 0.2444410973 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
13 Hb_000450_150 0.2496476102 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
14 Hb_003044_080 0.2509825163 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
15 Hb_006911_050 0.2639545417 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
16 Hb_000950_010 0.2647603898 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
17 Hb_006816_470 0.2669461091 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
18 Hb_026889_040 0.2698820501 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_000077_360 0.2698855667 - - sugar transporter, putative [Ricinus communis]
20 Hb_099990_010 0.2730324296 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]

Gene co-expression network

sample Hb_000115_010 Hb_000115_010 Hb_000820_050 Hb_000820_050 Hb_000115_010--Hb_000820_050 Hb_000820_060 Hb_000820_060 Hb_000115_010--Hb_000820_060 Hb_000032_450 Hb_000032_450 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_006268_020 Hb_006268_020 Hb_000115_010--Hb_006268_020 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_000820_050--Hb_000820_060 Hb_105328_010 Hb_105328_010 Hb_000820_050--Hb_105328_010 Hb_000820_050--Hb_006268_020 Hb_000820_050--Hb_000032_450 Hb_006472_080 Hb_006472_080 Hb_000820_050--Hb_006472_080 Hb_000820_060--Hb_006472_080 Hb_000820_060--Hb_105328_010 Hb_000820_060--Hb_000032_450 Hb_000820_060--Hb_006268_020 Hb_000032_450--Hb_105328_010 Hb_003878_050 Hb_003878_050 Hb_000032_450--Hb_003878_050 Hb_000703_280 Hb_000703_280 Hb_000032_450--Hb_000703_280 Hb_007534_060 Hb_007534_060 Hb_000032_450--Hb_007534_060 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040 Hb_000450_150 Hb_000450_150 Hb_000173_440--Hb_000450_150 Hb_000173_440--Hb_001006_220 Hb_000364_160 Hb_000364_160 Hb_000173_440--Hb_000364_160 Hb_002659_030 Hb_002659_030 Hb_000173_440--Hb_002659_030 Hb_056199_030 Hb_056199_030 Hb_000173_440--Hb_056199_030 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000512_070 Hb_000512_070 Hb_006268_020--Hb_000512_070 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160 Hb_033413_010 Hb_033413_010 Hb_001006_220--Hb_033413_010 Hb_001006_220--Hb_026889_040 Hb_088327_010 Hb_088327_010 Hb_001006_220--Hb_088327_010 Hb_091349_010 Hb_091349_010 Hb_001006_220--Hb_091349_010 Hb_001008_180 Hb_001008_180 Hb_001006_220--Hb_001008_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320106 0.68371 1.04281 3.87861 0.0365451 0.379587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129182 0.304839 6.03302 3.84351 2.93569

CAGE analysis