Hb_000820_060

Information

Type -
Description -
Location Contig820: 63885-64906
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_060 0.0 - - -
2 Hb_000820_050 0.087460842 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
3 Hb_000115_010 0.1714125584 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
4 Hb_006472_080 0.2154270829 - - -
5 Hb_105328_010 0.2156465891 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
6 Hb_000032_450 0.2390684341 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
7 Hb_006268_020 0.239481511 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
8 Hb_001550_050 0.2593192419 - - PREDICTED: J domain-containing protein spf31 [Eucalyptus grandis]
9 Hb_025311_020 0.2602355591 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
10 Hb_001085_150 0.2608713725 - - Purple acid phosphatase 15 [Theobroma cacao]
11 Hb_001045_110 0.263340791 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
12 Hb_003050_030 0.2686989477 - - Calcyclin-binding protein, putative [Ricinus communis]
13 Hb_001488_190 0.2763861664 - - alpha-amylase, putative [Ricinus communis]
14 Hb_008760_010 0.2798418443 - - berberine bridge enzyme [Hevea brasiliensis]
15 Hb_000032_460 0.2853102757 - - calcineurin B, putative [Ricinus communis]
16 Hb_020437_020 0.2866855386 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
17 Hb_000450_150 0.292133393 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
18 Hb_001008_180 0.2951349338 - - -
19 Hb_009615_080 0.2990037389 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
20 Hb_007943_060 0.3060560243 - - Rop5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000820_060 Hb_000820_060 Hb_000820_050 Hb_000820_050 Hb_000820_060--Hb_000820_050 Hb_000115_010 Hb_000115_010 Hb_000820_060--Hb_000115_010 Hb_006472_080 Hb_006472_080 Hb_000820_060--Hb_006472_080 Hb_105328_010 Hb_105328_010 Hb_000820_060--Hb_105328_010 Hb_000032_450 Hb_000032_450 Hb_000820_060--Hb_000032_450 Hb_006268_020 Hb_006268_020 Hb_000820_060--Hb_006268_020 Hb_000820_050--Hb_000115_010 Hb_000820_050--Hb_105328_010 Hb_000820_050--Hb_006268_020 Hb_000820_050--Hb_000032_450 Hb_000820_050--Hb_006472_080 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_000115_010--Hb_006268_020 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_006472_080--Hb_105328_010 Hb_001085_150 Hb_001085_150 Hb_006472_080--Hb_001085_150 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260 Hb_105328_010--Hb_000032_450 Hb_105328_010--Hb_001085_150 Hb_083940_010 Hb_083940_010 Hb_105328_010--Hb_083940_010 Hb_000703_280 Hb_000703_280 Hb_105328_010--Hb_000703_280 Hb_003878_050 Hb_003878_050 Hb_000032_450--Hb_003878_050 Hb_000032_450--Hb_000703_280 Hb_007534_060 Hb_007534_060 Hb_000032_450--Hb_007534_060 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000512_070 Hb_000512_070 Hb_006268_020--Hb_000512_070 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02441 1.3969 12.1547 13.7857 0.0844656 0.446312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27507 0.166933 34.3654 20.8137 11.3111

CAGE analysis