Hb_007534_060

Information

Type -
Description -
Location Contig7534: 59257-61233
Sequence    

Annotation

kegg
ID rcu:RCOM_0456860
description protein binding protein, putative
nr
ID XP_002528293.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID B9SQM4
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0456860 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst subunit exo70 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007534_060 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001488_190 0.170010873 - - alpha-amylase, putative [Ricinus communis]
3 Hb_000077_360 0.1797201732 - - sugar transporter, putative [Ricinus communis]
4 Hb_069355_010 0.1830127032 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
5 Hb_001289_020 0.1918532675 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
6 Hb_000477_040 0.1972799607 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000032_450 0.1998080485 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
8 Hb_003878_050 0.2000152678 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
9 Hb_003197_010 0.2153294923 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007925_010 0.2165088248 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
11 Hb_005470_030 0.2181956438 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
12 Hb_000849_120 0.2199906557 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
13 Hb_042083_030 0.2215400449 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000106_030 0.2226587243 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000454_040 0.2292306508 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_008725_080 0.2300360554 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
17 Hb_000210_100 0.2312660904 - - pepsin A, putative [Ricinus communis]
18 Hb_105959_010 0.2323252835 - - asparagine synthetase, putative [Ricinus communis]
19 Hb_000107_350 0.2324839197 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
20 Hb_000310_100 0.2337217087 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007534_060 Hb_007534_060 Hb_001488_190 Hb_001488_190 Hb_007534_060--Hb_001488_190 Hb_000077_360 Hb_000077_360 Hb_007534_060--Hb_000077_360 Hb_069355_010 Hb_069355_010 Hb_007534_060--Hb_069355_010 Hb_001289_020 Hb_001289_020 Hb_007534_060--Hb_001289_020 Hb_000477_040 Hb_000477_040 Hb_007534_060--Hb_000477_040 Hb_000032_450 Hb_000032_450 Hb_007534_060--Hb_000032_450 Hb_000454_040 Hb_000454_040 Hb_001488_190--Hb_000454_040 Hb_005622_020 Hb_005622_020 Hb_001488_190--Hb_005622_020 Hb_003197_010 Hb_003197_010 Hb_001488_190--Hb_003197_010 Hb_003813_180 Hb_003813_180 Hb_001488_190--Hb_003813_180 Hb_005470_030 Hb_005470_030 Hb_001488_190--Hb_005470_030 Hb_132840_070 Hb_132840_070 Hb_000077_360--Hb_132840_070 Hb_000106_030 Hb_000106_030 Hb_000077_360--Hb_000106_030 Hb_005976_010 Hb_005976_010 Hb_000077_360--Hb_005976_010 Hb_000077_360--Hb_003197_010 Hb_000077_360--Hb_000477_040 Hb_000300_520 Hb_000300_520 Hb_069355_010--Hb_000300_520 Hb_020805_140 Hb_020805_140 Hb_069355_010--Hb_020805_140 Hb_000210_100 Hb_000210_100 Hb_069355_010--Hb_000210_100 Hb_001481_130 Hb_001481_130 Hb_069355_010--Hb_001481_130 Hb_069355_010--Hb_001289_020 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_007925_010 Hb_007925_010 Hb_001289_020--Hb_007925_010 Hb_001289_020--Hb_000210_100 Hb_001289_020--Hb_000300_520 Hb_105959_010 Hb_105959_010 Hb_001289_020--Hb_105959_010 Hb_000477_040--Hb_005470_030 Hb_003878_050 Hb_003878_050 Hb_000477_040--Hb_003878_050 Hb_000849_120 Hb_000849_120 Hb_000477_040--Hb_000849_120 Hb_000110_060 Hb_000110_060 Hb_000477_040--Hb_000110_060 Hb_000465_320 Hb_000465_320 Hb_000477_040--Hb_000465_320 Hb_001904_050 Hb_001904_050 Hb_000477_040--Hb_001904_050 Hb_105328_010 Hb_105328_010 Hb_000032_450--Hb_105328_010 Hb_000115_010 Hb_000115_010 Hb_000032_450--Hb_000115_010 Hb_000032_450--Hb_003878_050 Hb_000703_280 Hb_000703_280 Hb_000032_450--Hb_000703_280 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.294091 0.0798225 0.587234 1.76038 0 0.0352101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0914399 0.0899341 0.954743 0.32921 1.13999

CAGE analysis