Hb_003813_180

Information

Type -
Description -
Location Contig3813: 118595-123895
Sequence    

Annotation

kegg
ID rcu:RCOM_1728170
description sterol desaturase, putative (EC:1.14.21.6)
nr
ID XP_002516756.1
description sterol desaturase, putative [Ricinus communis]
swissprot
ID Q9ZT29
description Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9RSN7
description Sterol desaturase, putative OS=Ricinus communis GN=RCOM_1728170 PE=4 SV=1
Gene Ontology
ID GO:0016021
description delta -sterol-c5 -desaturase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38640: 118594-123881
cDNA
(Sanger)
(ID:Location)		 016_H14.ab1: 118594-123413 , 016_K11.ab1: 118594-123425

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_180 0.0 - - sterol desaturase, putative [Ricinus communis]
2 Hb_008279_030 0.173172528 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008725_080 0.1842941197 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
4 Hb_105959_010 0.1920560516 - - asparagine synthetase, putative [Ricinus communis]
5 Hb_011004_050 0.2000763109 - - PREDICTED: kinesin-13A [Jatropha curcas]
6 Hb_002662_040 0.2013660231 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
7 Hb_001488_190 0.2054692184 - - alpha-amylase, putative [Ricinus communis]
8 Hb_005622_020 0.2120072392 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
9 Hb_000108_240 0.2216318741 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
10 Hb_017358_070 0.224136142 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
11 Hb_006634_100 0.2309875493 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003408_010 0.2317757362 - - fructokinase [Manihot esculenta]
13 Hb_001545_070 0.233174631 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000328_010 0.2342181225 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
15 Hb_007943_060 0.2371836393 - - Rop5 [Hevea brasiliensis]
16 Hb_001904_050 0.2383028473 - - alpha-tubulin 1 [Hevea brasiliensis]
17 Hb_000477_040 0.2445955501 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011828_040 0.2447555369 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
19 Hb_004163_030 0.2468912305 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
20 Hb_008725_070 0.2469187227 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_003813_180 Hb_003813_180 Hb_008279_030 Hb_008279_030 Hb_003813_180--Hb_008279_030 Hb_008725_080 Hb_008725_080 Hb_003813_180--Hb_008725_080 Hb_105959_010 Hb_105959_010 Hb_003813_180--Hb_105959_010 Hb_011004_050 Hb_011004_050 Hb_003813_180--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_003813_180--Hb_002662_040 Hb_001488_190 Hb_001488_190 Hb_003813_180--Hb_001488_190 Hb_008279_030--Hb_011004_050 Hb_008279_030--Hb_002662_040 Hb_006634_100 Hb_006634_100 Hb_008279_030--Hb_006634_100 Hb_004163_030 Hb_004163_030 Hb_008279_030--Hb_004163_030 Hb_000011_410 Hb_000011_410 Hb_008279_030--Hb_000011_410 Hb_003408_010 Hb_003408_010 Hb_008725_080--Hb_003408_010 Hb_000328_010 Hb_000328_010 Hb_008725_080--Hb_000328_010 Hb_008725_080--Hb_105959_010 Hb_005144_120 Hb_005144_120 Hb_008725_080--Hb_005144_120 Hb_006153_160 Hb_006153_160 Hb_008725_080--Hb_006153_160 Hb_000108_240 Hb_000108_240 Hb_008725_080--Hb_000108_240 Hb_007925_010 Hb_007925_010 Hb_105959_010--Hb_007925_010 Hb_001289_020 Hb_001289_020 Hb_105959_010--Hb_001289_020 Hb_000742_160 Hb_000742_160 Hb_105959_010--Hb_000742_160 Hb_105959_010--Hb_003408_010 Hb_000152_440 Hb_000152_440 Hb_011004_050--Hb_000152_440 Hb_011004_050--Hb_005144_120 Hb_001579_300 Hb_001579_300 Hb_011004_050--Hb_001579_300 Hb_000086_210 Hb_000086_210 Hb_011004_050--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_011004_050--Hb_005563_010 Hb_005496_020 Hb_005496_020 Hb_011004_050--Hb_005496_020 Hb_000526_010 Hb_000526_010 Hb_002662_040--Hb_000526_010 Hb_002662_040--Hb_004163_030 Hb_002662_040--Hb_006634_100 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_000935_080 Hb_000935_080 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_000454_040 Hb_000454_040 Hb_001488_190--Hb_000454_040 Hb_007534_060 Hb_007534_060 Hb_001488_190--Hb_007534_060 Hb_005622_020 Hb_005622_020 Hb_001488_190--Hb_005622_020 Hb_003197_010 Hb_003197_010 Hb_001488_190--Hb_003197_010 Hb_005470_030 Hb_005470_030 Hb_001488_190--Hb_005470_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95561 1.01605 34.1343 28.8532 0.95933 0.615533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9341 1.84961 21.426 2.4235 12.2618

CAGE analysis