Hb_002659_030

Information

Type -
Description -
Location Contig2659: 63998-64464
Sequence    

Annotation

kegg
ID rcu:RCOM_1602020
description copper transport protein atox1, putative
nr
ID XP_002510724.1
description copper transport protein atox1, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9R8T1
description Copper transport protein atox1, putative OS=Ricinus communis GN=RCOM_1602020 PE=4 SV=1
Gene Ontology
ID GO:0046872
description copper transport protein atx1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27751: 63615-64437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002659_030 0.0 - - copper transport protein atox1, putative [Ricinus communis]
2 Hb_029920_020 0.2086502477 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
3 Hb_002320_080 0.2106566133 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
4 Hb_000389_050 0.2329721262 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
5 Hb_016564_010 0.2351027849 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
6 Hb_000336_230 0.2360724262 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
7 Hb_011472_010 0.2371275651 - - PREDICTED: protein yippee-like [Jatropha curcas]
8 Hb_026889_040 0.2427435776 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_005162_100 0.2462908618 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003878_050 0.2503737317 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
11 Hb_000059_010 0.2537070567 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_002783_110 0.2560699547 - - Zeamatin precursor, putative [Ricinus communis]
13 Hb_000173_440 0.2564375811 - - YALI0B05280p [Yarrowia lipolytica]
14 Hb_132840_070 0.2575192193 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
15 Hb_001481_130 0.2610225572 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022593_010 0.264910027 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
17 Hb_019863_100 0.2663412719 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
18 Hb_001377_420 0.2676659183 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000382_020 0.2698770533 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
20 Hb_187677_010 0.2703840589 - - -

Gene co-expression network

sample Hb_002659_030 Hb_002659_030 Hb_029920_020 Hb_029920_020 Hb_002659_030--Hb_029920_020 Hb_002320_080 Hb_002320_080 Hb_002659_030--Hb_002320_080 Hb_000389_050 Hb_000389_050 Hb_002659_030--Hb_000389_050 Hb_016564_010 Hb_016564_010 Hb_002659_030--Hb_016564_010 Hb_000336_230 Hb_000336_230 Hb_002659_030--Hb_000336_230 Hb_011472_010 Hb_011472_010 Hb_002659_030--Hb_011472_010 Hb_029920_020--Hb_002320_080 Hb_000260_280 Hb_000260_280 Hb_029920_020--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_029920_020--Hb_000192_020 Hb_012753_030 Hb_012753_030 Hb_029920_020--Hb_012753_030 Hb_001454_100 Hb_001454_100 Hb_029920_020--Hb_001454_100 Hb_001486_270 Hb_001486_270 Hb_029920_020--Hb_001486_270 Hb_000077_200 Hb_000077_200 Hb_002320_080--Hb_000077_200 Hb_000946_100 Hb_000946_100 Hb_002320_080--Hb_000946_100 Hb_026889_040 Hb_026889_040 Hb_002320_080--Hb_026889_040 Hb_001307_110 Hb_001307_110 Hb_002320_080--Hb_001307_110 Hb_015675_030 Hb_015675_030 Hb_002320_080--Hb_015675_030 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220 Hb_016564_010--Hb_001454_100 Hb_001153_120 Hb_001153_120 Hb_016564_010--Hb_001153_120 Hb_001004_150 Hb_001004_150 Hb_016564_010--Hb_001004_150 Hb_025466_010 Hb_025466_010 Hb_016564_010--Hb_025466_010 Hb_003097_060 Hb_003097_060 Hb_016564_010--Hb_003097_060 Hb_007590_090 Hb_007590_090 Hb_000336_230--Hb_007590_090 Hb_140459_010 Hb_140459_010 Hb_000336_230--Hb_140459_010 Hb_132840_070 Hb_132840_070 Hb_000336_230--Hb_132840_070 Hb_004007_110 Hb_004007_110 Hb_000336_230--Hb_004007_110 Hb_024468_010 Hb_024468_010 Hb_000336_230--Hb_024468_010 Hb_069696_010 Hb_069696_010 Hb_000336_230--Hb_069696_010 Hb_012163_020 Hb_012163_020 Hb_011472_010--Hb_012163_020 Hb_000732_210 Hb_000732_210 Hb_011472_010--Hb_000732_210 Hb_007943_190 Hb_007943_190 Hb_011472_010--Hb_007943_190 Hb_001377_420 Hb_001377_420 Hb_011472_010--Hb_001377_420 Hb_000922_120 Hb_000922_120 Hb_011472_010--Hb_000922_120 Hb_001504_140 Hb_001504_140 Hb_011472_010--Hb_001504_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.426259 0.308952 2.81053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.427651 1.34934 3.26461 0.785919 1.51443

CAGE analysis