Hb_012753_030

Information

Type -
Description -
Location Contig12753: 13216-19395
Sequence    

Annotation

kegg
ID rcu:RCOM_1684250
description Transcriptional corepressor SEUSS, putative
nr
ID XP_012086996.1
description PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
swissprot
ID Q94BP0
description Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana GN=SLK2 PE=2 SV=1
trembl
ID A0A067JZR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20661 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_030 0.0 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
2 Hb_029920_020 0.1817552061 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
3 Hb_001208_030 0.2031800577 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000192_020 0.2035366036 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
5 Hb_001584_240 0.2107430137 - - ADP-ribosylation factor [Gossypium barbadense]
6 Hb_001486_270 0.2179879646 - - Ann10 [Manihot esculenta]
7 Hb_175933_010 0.2220147784 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
8 Hb_000260_280 0.2225165285 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_002320_080 0.2262043288 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
10 Hb_003994_020 0.2299347917 - - -
11 Hb_000217_010 0.2320805811 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
12 Hb_008206_100 0.2323395601 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
13 Hb_000754_070 0.2341536962 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001208_040 0.2361270671 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
15 Hb_032972_010 0.2378501876 - - Glycolipid transfer protein, putative [Ricinus communis]
16 Hb_000345_080 0.241060503 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
17 Hb_001408_070 0.2426905706 - - -
18 Hb_006903_030 0.2461160952 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
19 Hb_000077_200 0.2486505535 - - PREDICTED: thioredoxin [Jatropha curcas]
20 Hb_178968_040 0.2497503633 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012753_030 Hb_012753_030 Hb_029920_020 Hb_029920_020 Hb_012753_030--Hb_029920_020 Hb_001208_030 Hb_001208_030 Hb_012753_030--Hb_001208_030 Hb_000192_020 Hb_000192_020 Hb_012753_030--Hb_000192_020 Hb_001584_240 Hb_001584_240 Hb_012753_030--Hb_001584_240 Hb_001486_270 Hb_001486_270 Hb_012753_030--Hb_001486_270 Hb_175933_010 Hb_175933_010 Hb_012753_030--Hb_175933_010 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_000260_280 Hb_000260_280 Hb_029920_020--Hb_000260_280 Hb_029920_020--Hb_000192_020 Hb_001454_100 Hb_001454_100 Hb_029920_020--Hb_001454_100 Hb_029920_020--Hb_001486_270 Hb_001208_040 Hb_001208_040 Hb_001208_030--Hb_001208_040 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010 Hb_001208_030--Hb_175933_010 Hb_003304_110 Hb_003304_110 Hb_000192_020--Hb_003304_110 Hb_000217_010 Hb_000217_010 Hb_000192_020--Hb_000217_010 Hb_000192_020--Hb_000260_280 Hb_002743_040 Hb_002743_040 Hb_000192_020--Hb_002743_040 Hb_002960_130 Hb_002960_130 Hb_001584_240--Hb_002960_130 Hb_000671_130 Hb_000671_130 Hb_001584_240--Hb_000671_130 Hb_001195_070 Hb_001195_070 Hb_001584_240--Hb_001195_070 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001584_240--Hb_001208_040 Hb_001486_270--Hb_000260_280 Hb_002228_080 Hb_002228_080 Hb_001486_270--Hb_002228_080 Hb_001597_050 Hb_001597_050 Hb_001486_270--Hb_001597_050 Hb_001486_270--Hb_175933_010 Hb_001486_270--Hb_000192_020 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0311498 0.144475 0 0.0157282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188819 0.0742882 0.0282871 0.023611 0.0315363

CAGE analysis