Hb_076219_010

Information

Type -
Description -
Location Contig76219: 876-1262
Sequence    

Annotation

kegg
ID rcu:RCOM_0811340
description ribosomal pseudouridine synthase, putative (EC:3.2.1.17)
nr
ID XP_012075891.1
description PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
swissprot
ID Q9LT72
description RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1
trembl
ID A0A067LF94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15463 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076219_010 0.0 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
2 Hb_145880_020 0.1213967114 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
3 Hb_001410_060 0.1324345375 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
4 Hb_000377_120 0.1330808592 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_000077_180 0.1369166482 - - -
6 Hb_001208_030 0.1370801996 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005306_070 0.1423710675 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
8 Hb_000849_130 0.14601962 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
9 Hb_000563_200 0.1471280235 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
10 Hb_001865_090 0.1496688818 - - hypothetical protein VITISV_005773 [Vitis vinifera]
11 Hb_002631_260 0.1536978864 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
12 Hb_001208_040 0.1543556467 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
13 Hb_000009_290 0.1566819433 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
14 Hb_001635_130 0.1626223623 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
15 Hb_001322_070 0.1642826957 - - protein with unknown function [Ricinus communis]
16 Hb_005269_080 0.1648249739 - - protein with unknown function [Ricinus communis]
17 Hb_000110_120 0.1649979021 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
18 Hb_000240_120 0.1654109783 - - ras-related protein Rab-5B [Reticulomyxa filosa]
19 Hb_027684_020 0.1659209418 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
20 Hb_000116_040 0.1663017566 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_076219_010 Hb_076219_010 Hb_145880_020 Hb_145880_020 Hb_076219_010--Hb_145880_020 Hb_001410_060 Hb_001410_060 Hb_076219_010--Hb_001410_060 Hb_000377_120 Hb_000377_120 Hb_076219_010--Hb_000377_120 Hb_000077_180 Hb_000077_180 Hb_076219_010--Hb_000077_180 Hb_001208_030 Hb_001208_030 Hb_076219_010--Hb_001208_030 Hb_005306_070 Hb_005306_070 Hb_076219_010--Hb_005306_070 Hb_000563_200 Hb_000563_200 Hb_145880_020--Hb_000563_200 Hb_145880_020--Hb_001410_060 Hb_148209_010 Hb_148209_010 Hb_145880_020--Hb_148209_010 Hb_000110_120 Hb_000110_120 Hb_145880_020--Hb_000110_120 Hb_002303_060 Hb_002303_060 Hb_145880_020--Hb_002303_060 Hb_004627_030 Hb_004627_030 Hb_145880_020--Hb_004627_030 Hb_001410_060--Hb_000377_120 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_000136_350 Hb_000136_350 Hb_000377_120--Hb_000136_350 Hb_000377_120--Hb_000077_180 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000377_120--Hb_000922_040 Hb_186982_040 Hb_186982_040 Hb_000377_120--Hb_186982_040 Hb_000077_180--Hb_001410_060 Hb_017491_020 Hb_017491_020 Hb_000077_180--Hb_017491_020 Hb_005460_060 Hb_005460_060 Hb_000077_180--Hb_005460_060 Hb_000077_180--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_000077_180--Hb_000009_290 Hb_001208_040 Hb_001208_040 Hb_001208_030--Hb_001208_040 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_175933_010 Hb_175933_010 Hb_001208_030--Hb_175933_010 Hb_000215_330 Hb_000215_330 Hb_005306_070--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_000107_300 Hb_000107_300 Hb_005306_070--Hb_000107_300 Hb_003494_050 Hb_003494_050 Hb_005306_070--Hb_003494_050 Hb_005306_070--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.888625 1.30117 2.44785 9.18527 0.766412 3.75738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33764 9.18134 4.22958 3.74503 1.45014

CAGE analysis