Hb_009230_040

Information

Type -
Description -
Location Contig9230: 51723-52880
Sequence    

Annotation

kegg
ID rcu:RCOM_0174350
description hypothetical protein
nr
ID XP_002527480.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID B9SNB1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009230_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_064885_050 0.1321984264 - - PREDICTED: BAHD acyltransferase At5g47980-like [Populus euphratica]
3 Hb_003581_240 0.1384007343 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000813_120 0.1393782624 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
5 Hb_000118_010 0.1448548271 desease resistance Gene Name: LRR_4 hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
6 Hb_027288_010 0.1452096591 - - mutt domain protein, putative [Ricinus communis]
7 Hb_001173_050 0.1456481671 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
8 Hb_007483_030 0.1516460566 - - -
9 Hb_183700_010 0.151924148 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_007747_030 0.1549523015 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
11 Hb_041769_010 0.1571997502 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_003052_070 0.1572259155 - - PREDICTED: peroxidase 11 [Jatropha curcas]
13 Hb_004185_040 0.1577323508 - - polygalacturonase, putative [Ricinus communis]
14 Hb_002272_160 0.1586518226 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_025526_090 0.1587989973 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
16 Hb_146023_010 0.1589347215 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_059162_010 0.158945718 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002234_150 0.1605332567 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
19 Hb_007875_070 0.1609918118 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
20 Hb_000567_310 0.1628876712 - - Miraculin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009230_040 Hb_009230_040 Hb_064885_050 Hb_064885_050 Hb_009230_040--Hb_064885_050 Hb_003581_240 Hb_003581_240 Hb_009230_040--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_009230_040--Hb_000813_120 Hb_000118_010 Hb_000118_010 Hb_009230_040--Hb_000118_010 Hb_027288_010 Hb_027288_010 Hb_009230_040--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_009230_040--Hb_001173_050 Hb_146023_010 Hb_146023_010 Hb_064885_050--Hb_146023_010 Hb_000939_030 Hb_000939_030 Hb_064885_050--Hb_000939_030 Hb_011856_010 Hb_011856_010 Hb_064885_050--Hb_011856_010 Hb_176979_010 Hb_176979_010 Hb_064885_050--Hb_176979_010 Hb_139460_010 Hb_139460_010 Hb_064885_050--Hb_139460_010 Hb_183700_010 Hb_183700_010 Hb_003581_240--Hb_183700_010 Hb_003581_240--Hb_000813_120 Hb_007483_030 Hb_007483_030 Hb_003581_240--Hb_007483_030 Hb_003581_240--Hb_027288_010 Hb_006919_010 Hb_006919_010 Hb_003581_240--Hb_006919_010 Hb_014113_010 Hb_014113_010 Hb_003581_240--Hb_014113_010 Hb_000813_120--Hb_183700_010 Hb_039342_030 Hb_039342_030 Hb_000813_120--Hb_039342_030 Hb_004185_040 Hb_004185_040 Hb_000813_120--Hb_004185_040 Hb_004195_040 Hb_004195_040 Hb_000813_120--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_000813_120--Hb_012019_030 Hb_000813_120--Hb_001173_050 Hb_000101_050 Hb_000101_050 Hb_000118_010--Hb_000101_050 Hb_005257_020 Hb_005257_020 Hb_000118_010--Hb_005257_020 Hb_000411_060 Hb_000411_060 Hb_000118_010--Hb_000411_060 Hb_002234_150 Hb_002234_150 Hb_000118_010--Hb_002234_150 Hb_001902_180 Hb_001902_180 Hb_000118_010--Hb_001902_180 Hb_000118_010--Hb_183700_010 Hb_027288_010--Hb_007483_030 Hb_003052_070 Hb_003052_070 Hb_027288_010--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_027288_010--Hb_007747_030 Hb_003166_040 Hb_003166_040 Hb_027288_010--Hb_003166_040 Hb_000567_310 Hb_000567_310 Hb_027288_010--Hb_000567_310 Hb_002272_160 Hb_002272_160 Hb_027288_010--Hb_002272_160 Hb_001173_050--Hb_011856_010 Hb_025526_090 Hb_025526_090 Hb_001173_050--Hb_025526_090 Hb_001173_050--Hb_139460_010 Hb_001173_050--Hb_004185_040 Hb_001173_050--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_001173_050--Hb_001328_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.360688 0.085382 0.0604306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0618449 1.38857 0

CAGE analysis