Hb_000118_010

Information

Type desease resistance
Description Gene Name: LRR_4
Location Contig118: 42190-50625
Sequence    

Annotation

kegg
ID pop:POPTR_0021s00470g
description hypothetical protein
nr
ID XP_006389596.1
description hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID U7DZR3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0021s00470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000118_010 0.0 desease resistance Gene Name: LRR_4 hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
2 Hb_000101_050 0.1186886687 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
3 Hb_005257_020 0.1193955981 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
4 Hb_000411_060 0.1221635491 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_002234_150 0.1328342631 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
6 Hb_001902_180 0.1357577931 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
7 Hb_183700_010 0.1432498094 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_007875_070 0.1439731068 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
9 Hb_009230_040 0.1448548271 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002311_050 0.1452377344 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
11 Hb_005731_080 0.1457571824 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_006446_060 0.1458886944 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
13 Hb_000487_170 0.1479055165 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_005993_070 0.1489008434 - - lipid binding protein, putative [Ricinus communis]
15 Hb_001952_110 0.1489272153 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
16 Hb_041769_010 0.1492489908 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_003010_040 0.1500985493 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
18 Hb_001047_250 0.1529914592 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_001013_040 0.153139701 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
20 Hb_006452_050 0.1532225784 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000118_010 Hb_000118_010 Hb_000101_050 Hb_000101_050 Hb_000118_010--Hb_000101_050 Hb_005257_020 Hb_005257_020 Hb_000118_010--Hb_005257_020 Hb_000411_060 Hb_000411_060 Hb_000118_010--Hb_000411_060 Hb_002234_150 Hb_002234_150 Hb_000118_010--Hb_002234_150 Hb_001902_180 Hb_001902_180 Hb_000118_010--Hb_001902_180 Hb_183700_010 Hb_183700_010 Hb_000118_010--Hb_183700_010 Hb_006446_060 Hb_006446_060 Hb_000101_050--Hb_006446_060 Hb_041769_010 Hb_041769_010 Hb_000101_050--Hb_041769_010 Hb_000101_050--Hb_001902_180 Hb_005993_070 Hb_005993_070 Hb_000101_050--Hb_005993_070 Hb_005731_080 Hb_005731_080 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_002311_050 Hb_002311_050 Hb_005257_020--Hb_002311_050 Hb_031862_240 Hb_031862_240 Hb_005257_020--Hb_031862_240 Hb_005257_020--Hb_002234_150 Hb_001080_310 Hb_001080_310 Hb_005257_020--Hb_001080_310 Hb_006478_190 Hb_006478_190 Hb_005257_020--Hb_006478_190 Hb_009012_020 Hb_009012_020 Hb_000411_060--Hb_009012_020 Hb_000487_170 Hb_000487_170 Hb_000411_060--Hb_000487_170 Hb_000411_060--Hb_001902_180 Hb_000411_060--Hb_000101_050 Hb_008080_040 Hb_008080_040 Hb_000411_060--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_000411_060--Hb_001357_260 Hb_002234_150--Hb_001080_310 Hb_002234_150--Hb_002311_050 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_002234_150--Hb_005731_080 Hb_000251_100 Hb_000251_100 Hb_002234_150--Hb_000251_100 Hb_001902_180--Hb_005993_070 Hb_001902_180--Hb_006446_060 Hb_001902_180--Hb_009012_020 Hb_001902_180--Hb_005731_080 Hb_003581_240 Hb_003581_240 Hb_183700_010--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_183700_010--Hb_000813_120 Hb_002766_040 Hb_002766_040 Hb_183700_010--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_183700_010--Hb_007735_010 Hb_014113_010 Hb_014113_010 Hb_183700_010--Hb_014113_010 Hb_003010_040 Hb_003010_040 Hb_183700_010--Hb_003010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.164165 0.0262839 0.00499336 0 0.0029949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0117877 0.493681 0.0131566

CAGE analysis