Hb_005257_020

Information

Type -
Description -
Location Contig5257: 17550-23682
Sequence    

Annotation

kegg
ID rcu:RCOM_0557410
description Ent-kaurene synthase A, chloroplast precursor, putative (EC:5.5.1.13)
nr
ID XP_012092234.1
description PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
swissprot
ID O04408
description Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JPI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21925 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-copalyl diphosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005257_020 0.0 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
2 Hb_002311_050 0.1181028455 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
3 Hb_031862_240 0.1182097785 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_000118_010 0.1193955981 desease resistance Gene Name: LRR_4 hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
5 Hb_002234_150 0.1221258439 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
6 Hb_001080_310 0.1242895261 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_006478_190 0.1291067991 - - lipid binding protein, putative [Ricinus communis]
8 Hb_005731_080 0.129965767 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_005993_070 0.1306434777 - - lipid binding protein, putative [Ricinus communis]
10 Hb_001047_250 0.1323626596 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_001902_180 0.1343070074 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
12 Hb_007735_010 0.1384669787 - - Gibberellin 20 oxidase, putative [Ricinus communis]
13 Hb_000365_300 0.1414426298 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
14 Hb_002874_080 0.1428750564 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_007769_010 0.1430427447 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000329_410 0.14336068 - - Beta-expansin 3 precursor, putative [Ricinus communis]
17 Hb_000101_050 0.1437938464 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
18 Hb_006124_010 0.1479429394 - - -
19 Hb_161981_020 0.14801855 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_021931_030 0.1482792049 - - hypothetical protein JCGZ_04974 [Jatropha curcas]

Gene co-expression network

sample Hb_005257_020 Hb_005257_020 Hb_002311_050 Hb_002311_050 Hb_005257_020--Hb_002311_050 Hb_031862_240 Hb_031862_240 Hb_005257_020--Hb_031862_240 Hb_000118_010 Hb_000118_010 Hb_005257_020--Hb_000118_010 Hb_002234_150 Hb_002234_150 Hb_005257_020--Hb_002234_150 Hb_001080_310 Hb_001080_310 Hb_005257_020--Hb_001080_310 Hb_006478_190 Hb_006478_190 Hb_005257_020--Hb_006478_190 Hb_000365_300 Hb_000365_300 Hb_002311_050--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002311_050--Hb_005731_080 Hb_001141_170 Hb_001141_170 Hb_002311_050--Hb_001141_170 Hb_012019_030 Hb_012019_030 Hb_002311_050--Hb_012019_030 Hb_004195_040 Hb_004195_040 Hb_002311_050--Hb_004195_040 Hb_000813_120 Hb_000813_120 Hb_002311_050--Hb_000813_120 Hb_031862_240--Hb_006478_190 Hb_006124_010 Hb_006124_010 Hb_031862_240--Hb_006124_010 Hb_161981_020 Hb_161981_020 Hb_031862_240--Hb_161981_020 Hb_021931_030 Hb_021931_030 Hb_031862_240--Hb_021931_030 Hb_176138_010 Hb_176138_010 Hb_031862_240--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_031862_240--Hb_006810_080 Hb_000101_050 Hb_000101_050 Hb_000118_010--Hb_000101_050 Hb_000411_060 Hb_000411_060 Hb_000118_010--Hb_000411_060 Hb_000118_010--Hb_002234_150 Hb_001902_180 Hb_001902_180 Hb_000118_010--Hb_001902_180 Hb_183700_010 Hb_183700_010 Hb_000118_010--Hb_183700_010 Hb_002234_150--Hb_001080_310 Hb_002234_150--Hb_002311_050 Hb_041769_010 Hb_041769_010 Hb_002234_150--Hb_041769_010 Hb_002234_150--Hb_000365_300 Hb_002234_150--Hb_005731_080 Hb_000251_100 Hb_000251_100 Hb_002234_150--Hb_000251_100 Hb_002281_070 Hb_002281_070 Hb_001080_310--Hb_002281_070 Hb_001080_310--Hb_012019_030 Hb_001080_310--Hb_001141_170 Hb_001047_250 Hb_001047_250 Hb_001080_310--Hb_001047_250 Hb_001999_220 Hb_001999_220 Hb_001080_310--Hb_001999_220 Hb_000329_410 Hb_000329_410 Hb_006478_190--Hb_000329_410 Hb_006478_190--Hb_021931_030 Hb_006478_190--Hb_161981_020 Hb_110822_020 Hb_110822_020 Hb_006478_190--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_006478_190--Hb_002081_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.604014 0.0430037 0 0.00712446 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0127061 0.0242625 1.93136 0.027057

CAGE analysis