Hb_000939_030

Information

Type -
Description -
Location Contig939: 41408-42595
Sequence    

Annotation

kegg
ID rcu:RCOM_0174360
description hypothetical protein
nr
ID XP_012076214.1
description PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID B9SNB2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63031: 41538-41886 , PASA_asmbl_63032: 42090-42575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000939_030 0.0 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
2 Hb_146023_010 0.0945996027 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000976_020 0.1131694445 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_010712_020 0.1138450185 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
5 Hb_107258_010 0.1171694713 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
6 Hb_000140_260 0.1187390919 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
7 Hb_002110_270 0.1207351379 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
8 Hb_011824_010 0.1233932814 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_002917_010 0.1253291214 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
10 Hb_012660_010 0.1257391713 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
11 Hb_000189_260 0.1262341699 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001863_290 0.1264012133 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
13 Hb_064885_050 0.1287815229 - - PREDICTED: BAHD acyltransferase At5g47980-like [Populus euphratica]
14 Hb_000758_030 0.1288823391 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
15 Hb_000648_120 0.1294856082 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
16 Hb_161393_010 0.1296442081 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000984_080 0.1307248447 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_011856_010 0.1307406555 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003855_070 0.1319490344 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
20 Hb_000539_080 0.1331601657 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000939_030 Hb_000939_030 Hb_146023_010 Hb_146023_010 Hb_000939_030--Hb_146023_010 Hb_000976_020 Hb_000976_020 Hb_000939_030--Hb_000976_020 Hb_010712_020 Hb_010712_020 Hb_000939_030--Hb_010712_020 Hb_107258_010 Hb_107258_010 Hb_000939_030--Hb_107258_010 Hb_000140_260 Hb_000140_260 Hb_000939_030--Hb_000140_260 Hb_002110_270 Hb_002110_270 Hb_000939_030--Hb_002110_270 Hb_146023_010--Hb_010712_020 Hb_064398_010 Hb_064398_010 Hb_146023_010--Hb_064398_010 Hb_176979_010 Hb_176979_010 Hb_146023_010--Hb_176979_010 Hb_002917_010 Hb_002917_010 Hb_146023_010--Hb_002917_010 Hb_001047_250 Hb_001047_250 Hb_146023_010--Hb_001047_250 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_011824_010 Hb_011824_010 Hb_010712_020--Hb_011824_010 Hb_001863_290 Hb_001863_290 Hb_010712_020--Hb_001863_290 Hb_001141_170 Hb_001141_170 Hb_010712_020--Hb_001141_170 Hb_000160_230 Hb_000160_230 Hb_010712_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_010712_020--Hb_007810_140 Hb_010712_020--Hb_064398_010 Hb_107258_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_107258_010--Hb_001442_080 Hb_107258_010--Hb_011824_010 Hb_004564_010 Hb_004564_010 Hb_107258_010--Hb_004564_010 Hb_012660_010 Hb_012660_010 Hb_107258_010--Hb_012660_010 Hb_107258_010--Hb_010712_020 Hb_004200_040 Hb_004200_040 Hb_000140_260--Hb_004200_040 Hb_000205_210 Hb_000205_210 Hb_000140_260--Hb_000205_210 Hb_027141_010 Hb_027141_010 Hb_000140_260--Hb_027141_010 Hb_076895_020 Hb_076895_020 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_006006_070 Hb_006006_070 Hb_002110_270--Hb_006006_070 Hb_002110_270--Hb_000758_030 Hb_002110_270--Hb_076895_020 Hb_002110_270--Hb_000539_080 Hb_002110_270--Hb_000984_080 Hb_002900_070 Hb_002900_070 Hb_002110_270--Hb_002900_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.53877 0.190147 0.909308 0 0.132322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.180164 13.2648 0.267232

CAGE analysis