Hb_007125_010

Information

Type -
Description -
Location Contig7125: 17771-19740
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_012075894.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067KQZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55373: 16918-17454 , PASA_asmbl_55374: 16973-17403 , PASA_asmbl_55375: 17123-17524 , PASA_asmbl_55376: 18335-19273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007125_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_009615_080 0.2491574022 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
3 Hb_006683_010 0.2795348215 - - cell wall invertase [Manihot esculenta]
4 Hb_092995_020 0.2822304388 - - -
5 Hb_127993_010 0.2837961824 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
6 Hb_054362_010 0.2840504746 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
7 Hb_169574_010 0.2885508843 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
8 Hb_048874_010 0.289006142 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
9 Hb_005799_040 0.2902131578 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
10 Hb_008246_050 0.2902224789 - - -
11 Hb_000455_100 0.2904213937 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000816_270 0.2905901642 - - -
13 Hb_001549_030 0.2989851109 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_005285_010 0.2993990735 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
15 Hb_000876_040 0.2996198889 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
16 Hb_135008_010 0.3021515415 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_162126_010 0.3086603034 - - -
18 Hb_000430_010 0.3163736401 - - -
19 Hb_125847_010 0.3234765062 - - -
20 Hb_001956_030 0.3235778948 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]

Gene co-expression network

sample Hb_007125_010 Hb_007125_010 Hb_009615_080 Hb_009615_080 Hb_007125_010--Hb_009615_080 Hb_006683_010 Hb_006683_010 Hb_007125_010--Hb_006683_010 Hb_092995_020 Hb_092995_020 Hb_007125_010--Hb_092995_020 Hb_127993_010 Hb_127993_010 Hb_007125_010--Hb_127993_010 Hb_054362_010 Hb_054362_010 Hb_007125_010--Hb_054362_010 Hb_169574_010 Hb_169574_010 Hb_007125_010--Hb_169574_010 Hb_025311_020 Hb_025311_020 Hb_009615_080--Hb_025311_020 Hb_000876_040 Hb_000876_040 Hb_009615_080--Hb_000876_040 Hb_012424_010 Hb_012424_010 Hb_009615_080--Hb_012424_010 Hb_187513_010 Hb_187513_010 Hb_009615_080--Hb_187513_010 Hb_002513_050 Hb_002513_050 Hb_009615_080--Hb_002513_050 Hb_002675_120 Hb_002675_120 Hb_006683_010--Hb_002675_120 Hb_000050_130 Hb_000050_130 Hb_006683_010--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_006683_010--Hb_001652_110 Hb_008779_010 Hb_008779_010 Hb_006683_010--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_006683_010--Hb_008643_010 Hb_000160_100 Hb_000160_100 Hb_006683_010--Hb_000160_100 Hb_001242_010 Hb_001242_010 Hb_092995_020--Hb_001242_010 Hb_001549_030 Hb_001549_030 Hb_092995_020--Hb_001549_030 Hb_121461_020 Hb_121461_020 Hb_092995_020--Hb_121461_020 Hb_003050_030 Hb_003050_030 Hb_092995_020--Hb_003050_030 Hb_000143_020 Hb_000143_020 Hb_092995_020--Hb_000143_020 Hb_127993_010--Hb_054362_010 Hb_127993_010--Hb_169574_010 Hb_048874_010 Hb_048874_010 Hb_127993_010--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_127993_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_127993_010--Hb_008246_050 Hb_162126_010 Hb_162126_010 Hb_127993_010--Hb_162126_010 Hb_054362_010--Hb_169574_010 Hb_054362_010--Hb_048874_010 Hb_054362_010--Hb_005799_040 Hb_054362_010--Hb_008246_050 Hb_054362_010--Hb_162126_010 Hb_169574_010--Hb_048874_010 Hb_169574_010--Hb_005799_040 Hb_169574_010--Hb_008246_050 Hb_169574_010--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.134422 2.97107 5.84359 0.166757 0.01421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.258478 0.174287 28.4246 26.296 0.241477

CAGE analysis