Hb_001549_030

Information

Type -
Description -
Location Contig1549: 87253-91061
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID Q0KIP3
description Polyprotein, 3'-partial, putative (Fragment) OS=Solanum demissum GN=SDM1_42t00005 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001549_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_092995_020 0.232696768 - - -
3 Hb_007125_010 0.2989851109 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_002184_100 0.3232388925 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
5 Hb_001242_010 0.3414348538 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
6 Hb_121461_020 0.3574546467 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_009732_030 0.3665672701 - - TPA: hypothetical protein ZEAMMB73_114254 [Zea mays]
8 Hb_003589_070 0.3699953958 - - PREDICTED: uncharacterized protein LOC104242373 [Nicotiana sylvestris]
9 Hb_002311_060 0.3702035195 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
10 Hb_000450_150 0.3709412173 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
11 Hb_004228_090 0.3742483734 - - -
12 Hb_161929_010 0.3745758174 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_000816_270 0.3817184876 - - -
14 Hb_033555_020 0.3830036068 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
15 Hb_089173_010 0.3861526485 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
16 Hb_003050_030 0.3904294997 - - Calcyclin-binding protein, putative [Ricinus communis]
17 Hb_000980_070 0.3929567936 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
18 Hb_000143_020 0.3988142368 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
19 Hb_054362_010 0.4023930635 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
20 Hb_008370_010 0.4027197972 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001549_030 Hb_001549_030 Hb_092995_020 Hb_092995_020 Hb_001549_030--Hb_092995_020 Hb_007125_010 Hb_007125_010 Hb_001549_030--Hb_007125_010 Hb_002184_100 Hb_002184_100 Hb_001549_030--Hb_002184_100 Hb_001242_010 Hb_001242_010 Hb_001549_030--Hb_001242_010 Hb_121461_020 Hb_121461_020 Hb_001549_030--Hb_121461_020 Hb_009732_030 Hb_009732_030 Hb_001549_030--Hb_009732_030 Hb_092995_020--Hb_001242_010 Hb_092995_020--Hb_007125_010 Hb_092995_020--Hb_121461_020 Hb_003050_030 Hb_003050_030 Hb_092995_020--Hb_003050_030 Hb_000143_020 Hb_000143_020 Hb_092995_020--Hb_000143_020 Hb_009615_080 Hb_009615_080 Hb_007125_010--Hb_009615_080 Hb_006683_010 Hb_006683_010 Hb_007125_010--Hb_006683_010 Hb_127993_010 Hb_127993_010 Hb_007125_010--Hb_127993_010 Hb_054362_010 Hb_054362_010 Hb_007125_010--Hb_054362_010 Hb_169574_010 Hb_169574_010 Hb_007125_010--Hb_169574_010 Hb_003589_070 Hb_003589_070 Hb_002184_100--Hb_003589_070 Hb_089173_010 Hb_089173_010 Hb_002184_100--Hb_089173_010 Hb_008370_010 Hb_008370_010 Hb_002184_100--Hb_008370_010 Hb_006806_010 Hb_006806_010 Hb_002184_100--Hb_006806_010 Hb_002184_100--Hb_054362_010 Hb_002184_100--Hb_127993_010 Hb_010377_020 Hb_010377_020 Hb_001242_010--Hb_010377_020 Hb_000110_390 Hb_000110_390 Hb_001242_010--Hb_000110_390 Hb_001268_320 Hb_001268_320 Hb_001242_010--Hb_001268_320 Hb_001242_010--Hb_003050_030 Hb_020712_050 Hb_020712_050 Hb_001242_010--Hb_020712_050 Hb_022276_020 Hb_022276_020 Hb_121461_020--Hb_022276_020 Hb_162557_010 Hb_162557_010 Hb_121461_020--Hb_162557_010 Hb_000922_010 Hb_000922_010 Hb_121461_020--Hb_000922_010 Hb_009732_040 Hb_009732_040 Hb_121461_020--Hb_009732_040 Hb_002849_150 Hb_002849_150 Hb_121461_020--Hb_002849_150 Hb_003392_030 Hb_003392_030 Hb_121461_020--Hb_003392_030 Hb_001208_010 Hb_001208_010 Hb_009732_030--Hb_001208_010 Hb_000649_100 Hb_000649_100 Hb_009732_030--Hb_000649_100 Hb_067793_010 Hb_067793_010 Hb_009732_030--Hb_067793_010 Hb_002228_060 Hb_002228_060 Hb_009732_030--Hb_002228_060 Hb_000042_220 Hb_000042_220 Hb_009732_030--Hb_000042_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0110856 0.00537983 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0183859 0.022795 0

CAGE analysis