Hb_000649_100

Information

Type -
Description -
Location Contig649: 88398-89213
Sequence    

Annotation

kegg
ID rcu:RCOM_0598070
description protein with unknown function
nr
ID CBI26833.3
description unnamed protein product [Vitis vinifera]
swissprot
ID F4HXV6
description Nuclear pore complex protein NUP155 OS=Arabidopsis thaliana GN=NUP155 PE=1 SV=1
trembl
ID B9SJ33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0598070 PE=4 SV=1
Gene Ontology
ID GO:0044464
description nuclear pore complex protein nup155

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_100 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_009732_030 0.3064836256 - - TPA: hypothetical protein ZEAMMB73_114254 [Zea mays]
3 Hb_001208_010 0.3098191703 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
4 Hb_002835_430 0.3118493004 - - Alliin lyase precursor, putative [Ricinus communis]
5 Hb_000920_370 0.3308164631 - - hypothetical protein JCGZ_24527 [Jatropha curcas]
6 Hb_140902_010 0.330927684 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
7 Hb_002228_060 0.3328963119 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
8 Hb_001103_020 0.3484700763 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
9 Hb_002007_010 0.352598212 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
10 Hb_001123_240 0.3536793692 - - JAZ10 [Hevea brasiliensis]
11 Hb_000256_060 0.3584522117 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
12 Hb_007120_040 0.3763883089 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000545_160 0.3774496844 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
14 Hb_000042_220 0.3809828577 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
15 Hb_001504_140 0.3823542015 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
16 Hb_003777_170 0.3847482947 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015778_030 0.3881442698 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
18 Hb_000398_050 0.3926241296 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
19 Hb_011472_010 0.3949651136 - - PREDICTED: protein yippee-like [Jatropha curcas]
20 Hb_024154_020 0.3955407623 - - polyphenol oxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000649_100 Hb_000649_100 Hb_009732_030 Hb_009732_030 Hb_000649_100--Hb_009732_030 Hb_001208_010 Hb_001208_010 Hb_000649_100--Hb_001208_010 Hb_002835_430 Hb_002835_430 Hb_000649_100--Hb_002835_430 Hb_000920_370 Hb_000920_370 Hb_000649_100--Hb_000920_370 Hb_140902_010 Hb_140902_010 Hb_000649_100--Hb_140902_010 Hb_002228_060 Hb_002228_060 Hb_000649_100--Hb_002228_060 Hb_009732_030--Hb_001208_010 Hb_067793_010 Hb_067793_010 Hb_009732_030--Hb_067793_010 Hb_009732_030--Hb_002228_060 Hb_000042_220 Hb_000042_220 Hb_009732_030--Hb_000042_220 Hb_001549_030 Hb_001549_030 Hb_009732_030--Hb_001549_030 Hb_001208_010--Hb_067793_010 Hb_001124_220 Hb_001124_220 Hb_001208_010--Hb_001124_220 Hb_011472_010 Hb_011472_010 Hb_001208_010--Hb_011472_010 Hb_001208_010--Hb_000920_370 Hb_001123_240 Hb_001123_240 Hb_002835_430--Hb_001123_240 Hb_000788_060 Hb_000788_060 Hb_002835_430--Hb_000788_060 Hb_005306_010 Hb_005306_010 Hb_002835_430--Hb_005306_010 Hb_002835_430--Hb_000042_220 Hb_006907_080 Hb_006907_080 Hb_002835_430--Hb_006907_080 Hb_001242_050 Hb_001242_050 Hb_002835_430--Hb_001242_050 Hb_001959_130 Hb_001959_130 Hb_000920_370--Hb_001959_130 Hb_007305_030 Hb_007305_030 Hb_000920_370--Hb_007305_030 Hb_001123_210 Hb_001123_210 Hb_000920_370--Hb_001123_210 Hb_001158_190 Hb_001158_190 Hb_000920_370--Hb_001158_190 Hb_001300_260 Hb_001300_260 Hb_000920_370--Hb_001300_260 Hb_001516_020 Hb_001516_020 Hb_000920_370--Hb_001516_020 Hb_002739_030 Hb_002739_030 Hb_140902_010--Hb_002739_030 Hb_140902_010--Hb_002835_430 Hb_014613_010 Hb_014613_010 Hb_140902_010--Hb_014613_010 Hb_000802_110 Hb_000802_110 Hb_140902_010--Hb_000802_110 Hb_140902_010--Hb_001123_240 Hb_024154_020 Hb_024154_020 Hb_002228_060--Hb_024154_020 Hb_002893_160 Hb_002893_160 Hb_002228_060--Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_002228_060--Hb_010896_020 Hb_000510_020 Hb_000510_020 Hb_002228_060--Hb_000510_020 Hb_144451_010 Hb_144451_010 Hb_002228_060--Hb_144451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0623663 0 0.161686 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140679 0 0.186103 0.0460691 0

CAGE analysis