Hb_002835_430

Information

Type -
Description -
Location Contig2835: 382134-385225
Sequence    

Annotation

kegg
ID rcu:RCOM_1509450
description Alliin lyase precursor, putative (EC:4.4.1.4)
nr
ID XP_002511347.1
description Alliin lyase precursor, putative [Ricinus communis]
swissprot
ID Q94A02
description Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1
trembl
ID B9RAX2
description Alliin lyase, putative OS=Ricinus communis GN=RCOM_1509450 PE=4 SV=1
Gene Ontology
ID GO:0030170
description tryptophan aminotransferase-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_430 0.0 - - Alliin lyase precursor, putative [Ricinus communis]
2 Hb_001123_240 0.1682310961 - - JAZ10 [Hevea brasiliensis]
3 Hb_000788_060 0.2331288916 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
4 Hb_005306_010 0.2523477335 - - -
5 Hb_000042_220 0.2589493116 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
6 Hb_006907_080 0.2590314862 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
7 Hb_001242_050 0.2653147215 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001486_010 0.277784386 - - adenylsulfate kinase, putative [Ricinus communis]
9 Hb_173030_010 0.2786312843 - - hypothetical protein RCOM_1321060 [Ricinus communis]
10 Hb_075247_010 0.2794299313 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
11 Hb_000382_020 0.2866699486 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
12 Hb_023344_080 0.2882070217 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
13 Hb_002998_070 0.2886564265 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
14 Hb_158092_010 0.2935861665 - - CYP51 [Hevea brasiliensis]
15 Hb_168319_010 0.2937519626 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
16 Hb_002249_070 0.2937919572 - - gcn4-complementing protein, putative [Ricinus communis]
17 Hb_001123_210 0.2946023153 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
18 Hb_002027_030 0.2972997636 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000211_030 0.2974882955 - - sugar transporter, putative [Ricinus communis]
20 Hb_000676_340 0.2979265448 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002835_430 Hb_002835_430 Hb_001123_240 Hb_001123_240 Hb_002835_430--Hb_001123_240 Hb_000788_060 Hb_000788_060 Hb_002835_430--Hb_000788_060 Hb_005306_010 Hb_005306_010 Hb_002835_430--Hb_005306_010 Hb_000042_220 Hb_000042_220 Hb_002835_430--Hb_000042_220 Hb_006907_080 Hb_006907_080 Hb_002835_430--Hb_006907_080 Hb_001242_050 Hb_001242_050 Hb_002835_430--Hb_001242_050 Hb_001123_240--Hb_000788_060 Hb_075247_010 Hb_075247_010 Hb_001123_240--Hb_075247_010 Hb_004162_060 Hb_004162_060 Hb_001123_240--Hb_004162_060 Hb_004453_070 Hb_004453_070 Hb_001123_240--Hb_004453_070 Hb_023344_070 Hb_023344_070 Hb_001123_240--Hb_023344_070 Hb_000788_060--Hb_001242_050 Hb_000788_060--Hb_075247_010 Hb_000465_270 Hb_000465_270 Hb_000788_060--Hb_000465_270 Hb_023344_080 Hb_023344_080 Hb_000788_060--Hb_023344_080 Hb_002863_030 Hb_002863_030 Hb_000788_060--Hb_002863_030 Hb_001486_010 Hb_001486_010 Hb_000788_060--Hb_001486_010 Hb_001638_230 Hb_001638_230 Hb_005306_010--Hb_001638_230 Hb_005306_010--Hb_075247_010 Hb_002998_070 Hb_002998_070 Hb_005306_010--Hb_002998_070 Hb_010050_050 Hb_010050_050 Hb_005306_010--Hb_010050_050 Hb_158092_010 Hb_158092_010 Hb_005306_010--Hb_158092_010 Hb_000211_030 Hb_000211_030 Hb_005306_010--Hb_000211_030 Hb_001504_140 Hb_001504_140 Hb_000042_220--Hb_001504_140 Hb_011472_010 Hb_011472_010 Hb_000042_220--Hb_011472_010 Hb_001712_040 Hb_001712_040 Hb_000042_220--Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_000042_220--Hb_144484_010 Hb_007672_030 Hb_007672_030 Hb_000042_220--Hb_007672_030 Hb_140049_010 Hb_140049_010 Hb_006907_080--Hb_140049_010 Hb_000120_150 Hb_000120_150 Hb_006907_080--Hb_000120_150 Hb_007558_020 Hb_007558_020 Hb_006907_080--Hb_007558_020 Hb_000418_080 Hb_000418_080 Hb_006907_080--Hb_000418_080 Hb_104764_010 Hb_104764_010 Hb_006907_080--Hb_104764_010 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110 Hb_001377_420 Hb_001377_420 Hb_001242_050--Hb_001377_420 Hb_005496_090 Hb_005496_090 Hb_001242_050--Hb_005496_090 Hb_001242_050--Hb_000465_270 Hb_001242_050--Hb_075247_010 Hb_001242_050--Hb_158092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0286823 0.18794 0.142342 0.461563 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.261472 0.128564 0.482343 0.0718846 0

CAGE analysis