Hb_002228_060

Information

Type -
Description -
Location Contig2228: 45035-48656
Sequence    

Annotation

kegg
ID rcu:RCOM_1022390
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_002518148.1
description Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
swissprot
ID Q9LHP4
description Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1
trembl
ID B9RWM9
description Leucine-rich repeat receptor protein kinase EXS, putative OS=Ricinus communis GN=RCOM_1022390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_060 0.0 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
2 Hb_024154_020 0.2922187487 - - polyphenol oxidase [Hevea brasiliensis]
3 Hb_000649_100 0.3328963119 - - unnamed protein product [Vitis vinifera]
4 Hb_002893_160 0.334492919 - - peptidase, putative [Ricinus communis]
5 Hb_010896_020 0.3344929811 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000510_020 0.3345077118 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
7 Hb_144451_010 0.3345113162 - - hypothetical protein VITISV_001808 [Vitis vinifera]
8 Hb_000521_010 0.3345582652 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
9 Hb_062562_010 0.3347165897 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
10 Hb_110559_010 0.3352934832 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_001357_070 0.3354487554 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
12 Hb_001930_090 0.3374981079 - - DNA binding protein, putative [Ricinus communis]
13 Hb_104000_010 0.3378496128 - - -
14 Hb_009449_050 0.3482300026 - - PREDICTED: serine/threonine-protein kinase HT1-like [Nelumbo nucifera]
15 Hb_009732_030 0.3540150659 - - TPA: hypothetical protein ZEAMMB73_114254 [Zea mays]
16 Hb_137133_010 0.3633416205 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
17 Hb_000042_220 0.3662567474 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
18 Hb_001712_040 0.3697675238 - - Calmodulin, putative [Ricinus communis]
19 Hb_001623_210 0.3702495706 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
20 Hb_001243_010 0.3743019479 - - PREDICTED: dirigent protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_002228_060 Hb_002228_060 Hb_024154_020 Hb_024154_020 Hb_002228_060--Hb_024154_020 Hb_000649_100 Hb_000649_100 Hb_002228_060--Hb_000649_100 Hb_002893_160 Hb_002893_160 Hb_002228_060--Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_002228_060--Hb_010896_020 Hb_000510_020 Hb_000510_020 Hb_002228_060--Hb_000510_020 Hb_144451_010 Hb_144451_010 Hb_002228_060--Hb_144451_010 Hb_002843_080 Hb_002843_080 Hb_024154_020--Hb_002843_080 Hb_000752_070 Hb_000752_070 Hb_024154_020--Hb_000752_070 Hb_001712_040 Hb_001712_040 Hb_024154_020--Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_024154_020--Hb_144484_010 Hb_000922_120 Hb_000922_120 Hb_024154_020--Hb_000922_120 Hb_001504_140 Hb_001504_140 Hb_024154_020--Hb_001504_140 Hb_009732_030 Hb_009732_030 Hb_000649_100--Hb_009732_030 Hb_001208_010 Hb_001208_010 Hb_000649_100--Hb_001208_010 Hb_002835_430 Hb_002835_430 Hb_000649_100--Hb_002835_430 Hb_000920_370 Hb_000920_370 Hb_000649_100--Hb_000920_370 Hb_140902_010 Hb_140902_010 Hb_000649_100--Hb_140902_010 Hb_002893_160--Hb_010896_020 Hb_002893_160--Hb_000510_020 Hb_002893_160--Hb_144451_010 Hb_000521_010 Hb_000521_010 Hb_002893_160--Hb_000521_010 Hb_062562_010 Hb_062562_010 Hb_002893_160--Hb_062562_010 Hb_110559_010 Hb_110559_010 Hb_002893_160--Hb_110559_010 Hb_010896_020--Hb_000510_020 Hb_010896_020--Hb_144451_010 Hb_010896_020--Hb_000521_010 Hb_010896_020--Hb_062562_010 Hb_010896_020--Hb_110559_010 Hb_000510_020--Hb_144451_010 Hb_000510_020--Hb_000521_010 Hb_000510_020--Hb_062562_010 Hb_000510_020--Hb_110559_010 Hb_144451_010--Hb_000521_010 Hb_144451_010--Hb_062562_010 Hb_144451_010--Hb_110559_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00820712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0125664 0 0.018957 0 0

CAGE analysis