Hb_020712_050

Information

Type transcription factor
Description TF Family: B3
Location Contig20712: 28565-29703
Sequence    

Annotation

kegg
ID gmx:102669906
description B3 domain-containing transcription factor VRN1-like
nr
ID XP_012079557.1
description PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A067KA42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12309 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor vrn1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020712_050 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
2 Hb_051055_010 0.0980633463 - - -
3 Hb_002793_080 0.2058901033 - - ribonuclease t2, putative [Ricinus communis]
4 Hb_000733_150 0.2078549454 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
5 Hb_001242_010 0.2553964762 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
6 Hb_000110_390 0.2638677786 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
7 Hb_000042_180 0.2677095031 - - -
8 Hb_000003_850 0.2706043586 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
9 Hb_036537_010 0.2814700415 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003360_050 0.2916487343 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_034905_010 0.3036536388 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
12 Hb_168319_020 0.3052354056 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001268_320 0.3077115881 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
14 Hb_010377_020 0.3186009455 - - -
15 Hb_003058_250 0.3295396194 - - hypothetical protein RCOM_0006440 [Ricinus communis]
16 Hb_002193_070 0.3494326698 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001141_290 0.3504293709 - - -
18 Hb_001894_180 0.3563265218 - - galactinol synthase [Manihot esculenta]
19 Hb_001329_030 0.3619529174 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000545_160 0.3664171885 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]

Gene co-expression network

sample Hb_020712_050 Hb_020712_050 Hb_051055_010 Hb_051055_010 Hb_020712_050--Hb_051055_010 Hb_002793_080 Hb_002793_080 Hb_020712_050--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_020712_050--Hb_000733_150 Hb_001242_010 Hb_001242_010 Hb_020712_050--Hb_001242_010 Hb_000110_390 Hb_000110_390 Hb_020712_050--Hb_000110_390 Hb_000042_180 Hb_000042_180 Hb_020712_050--Hb_000042_180 Hb_051055_010--Hb_000733_150 Hb_051055_010--Hb_002793_080 Hb_036537_010 Hb_036537_010 Hb_051055_010--Hb_036537_010 Hb_000003_850 Hb_000003_850 Hb_051055_010--Hb_000003_850 Hb_003058_250 Hb_003058_250 Hb_051055_010--Hb_003058_250 Hb_002793_080--Hb_000733_150 Hb_002793_080--Hb_036537_010 Hb_002793_080--Hb_000042_180 Hb_034905_010 Hb_034905_010 Hb_002793_080--Hb_034905_010 Hb_000733_150--Hb_036537_010 Hb_000733_150--Hb_000042_180 Hb_000733_150--Hb_034905_010 Hb_010377_020 Hb_010377_020 Hb_001242_010--Hb_010377_020 Hb_092995_020 Hb_092995_020 Hb_001242_010--Hb_092995_020 Hb_001242_010--Hb_000110_390 Hb_001268_320 Hb_001268_320 Hb_001242_010--Hb_001268_320 Hb_003050_030 Hb_003050_030 Hb_001242_010--Hb_003050_030 Hb_168319_020 Hb_168319_020 Hb_000110_390--Hb_168319_020 Hb_000110_390--Hb_010377_020 Hb_000110_390--Hb_001268_320 Hb_002092_030 Hb_002092_030 Hb_000110_390--Hb_002092_030 Hb_001894_180 Hb_001894_180 Hb_000110_390--Hb_001894_180 Hb_003360_050 Hb_003360_050 Hb_000042_180--Hb_003360_050 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_002193_070 Hb_002193_070 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.184952 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.112464 0.0256159 0

CAGE analysis