Hb_003058_250

Information

Type -
Description -
Location Contig3058: 226526-227571
Sequence    

Annotation

kegg
ID rcu:RCOM_0006440
description hypothetical protein
nr
ID XP_002531472.1
description hypothetical protein RCOM_0006440 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZQ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0006440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_250 0.0 - - hypothetical protein RCOM_0006440 [Ricinus communis]
2 Hb_000733_150 0.2587148313 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
3 Hb_002793_080 0.2598062731 - - ribonuclease t2, putative [Ricinus communis]
4 Hb_036537_010 0.2836800597 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000003_850 0.2941508139 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
6 Hb_051055_010 0.2979810741 - - -
7 Hb_009449_050 0.3206265005 - - PREDICTED: serine/threonine-protein kinase HT1-like [Nelumbo nucifera]
8 Hb_148209_030 0.3228422893 - - hypothetical protein VITISV_017120 [Vitis vinifera]
9 Hb_020712_050 0.3295396194 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
10 Hb_001235_080 0.3476152863 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034905_010 0.3559162709 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
12 Hb_000042_180 0.3565084611 - - -
13 Hb_001163_140 0.363257282 - - -
14 Hb_183672_010 0.3659856972 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
15 Hb_176472_010 0.3722809308 - - BnaC01g33060D [Brassica napus]
16 Hb_005599_060 0.4199615444 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
17 Hb_000345_070 0.4211954748 rubber biosynthesis Gene Name: SRPP6 -
18 Hb_001268_320 0.4247302228 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
19 Hb_002217_280 0.4267424296 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023301_010 0.431349867 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_250 Hb_003058_250 Hb_000733_150 Hb_000733_150 Hb_003058_250--Hb_000733_150 Hb_002793_080 Hb_002793_080 Hb_003058_250--Hb_002793_080 Hb_036537_010 Hb_036537_010 Hb_003058_250--Hb_036537_010 Hb_000003_850 Hb_000003_850 Hb_003058_250--Hb_000003_850 Hb_051055_010 Hb_051055_010 Hb_003058_250--Hb_051055_010 Hb_009449_050 Hb_009449_050 Hb_003058_250--Hb_009449_050 Hb_000733_150--Hb_002793_080 Hb_000733_150--Hb_036537_010 Hb_000733_150--Hb_051055_010 Hb_020712_050 Hb_020712_050 Hb_000733_150--Hb_020712_050 Hb_000042_180 Hb_000042_180 Hb_000733_150--Hb_000042_180 Hb_034905_010 Hb_034905_010 Hb_000733_150--Hb_034905_010 Hb_002793_080--Hb_036537_010 Hb_002793_080--Hb_051055_010 Hb_002793_080--Hb_020712_050 Hb_002793_080--Hb_000042_180 Hb_002793_080--Hb_034905_010 Hb_036537_010--Hb_051055_010 Hb_176472_010 Hb_176472_010 Hb_036537_010--Hb_176472_010 Hb_004316_090 Hb_004316_090 Hb_036537_010--Hb_004316_090 Hb_036537_010--Hb_020712_050 Hb_001163_140 Hb_001163_140 Hb_000003_850--Hb_001163_140 Hb_000003_850--Hb_020712_050 Hb_000003_850--Hb_000042_180 Hb_000003_850--Hb_002793_080 Hb_000003_850--Hb_051055_010 Hb_051055_010--Hb_020712_050 Hb_023301_010 Hb_023301_010 Hb_009449_050--Hb_023301_010 Hb_012022_130 Hb_012022_130 Hb_009449_050--Hb_012022_130 Hb_000922_120 Hb_000922_120 Hb_009449_050--Hb_000922_120 Hb_002228_060 Hb_002228_060 Hb_009449_050--Hb_002228_060 Hb_000179_120 Hb_000179_120 Hb_009449_050--Hb_000179_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0355177 0 0 0.130723 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.114956 0 0

CAGE analysis