Hb_036537_010

Information

Type -
Description -
Location Contig36537: 3-763
Sequence    

Annotation

kegg
ID rcu:RCOM_1704400
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002518240.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q8S8S7
description U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=3 SV=1
trembl
ID B9RWX1
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1704400 PE=4 SV=1
Gene Ontology
ID GO:0004672
description u-box domain-containing protein 35 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036537_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000733_150 0.1508869026 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
3 Hb_002793_080 0.1602285413 - - ribonuclease t2, putative [Ricinus communis]
4 Hb_051055_010 0.1945982459 - - -
5 Hb_176472_010 0.2676745723 - - BnaC01g33060D [Brassica napus]
6 Hb_004316_090 0.2761792922 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
7 Hb_020712_050 0.2814700415 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
8 Hb_003058_250 0.2836800597 - - hypothetical protein RCOM_0006440 [Ricinus communis]
9 Hb_000440_030 0.3267111899 - - 50 kDa protein [Hevea brasiliensis]
10 Hb_034905_010 0.3284683396 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
11 Hb_152362_010 0.3314804974 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
12 Hb_000120_690 0.3355424627 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
13 Hb_001235_080 0.3476949266 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001235_090 0.3487299342 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
15 Hb_007975_040 0.363851861 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
16 Hb_117807_030 0.3657009999 - - Protein MCM10 [Gossypium arboreum]
17 Hb_183672_010 0.3707143009 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
18 Hb_000545_160 0.3710444542 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
19 Hb_000042_180 0.3740597688 - - -
20 Hb_004970_210 0.3761557933 - - -

Gene co-expression network

sample Hb_036537_010 Hb_036537_010 Hb_000733_150 Hb_000733_150 Hb_036537_010--Hb_000733_150 Hb_002793_080 Hb_002793_080 Hb_036537_010--Hb_002793_080 Hb_051055_010 Hb_051055_010 Hb_036537_010--Hb_051055_010 Hb_176472_010 Hb_176472_010 Hb_036537_010--Hb_176472_010 Hb_004316_090 Hb_004316_090 Hb_036537_010--Hb_004316_090 Hb_020712_050 Hb_020712_050 Hb_036537_010--Hb_020712_050 Hb_000733_150--Hb_002793_080 Hb_000733_150--Hb_051055_010 Hb_000733_150--Hb_020712_050 Hb_000042_180 Hb_000042_180 Hb_000733_150--Hb_000042_180 Hb_034905_010 Hb_034905_010 Hb_000733_150--Hb_034905_010 Hb_002793_080--Hb_051055_010 Hb_002793_080--Hb_020712_050 Hb_002793_080--Hb_000042_180 Hb_002793_080--Hb_034905_010 Hb_051055_010--Hb_020712_050 Hb_000003_850 Hb_000003_850 Hb_051055_010--Hb_000003_850 Hb_003058_250 Hb_003058_250 Hb_051055_010--Hb_003058_250 Hb_117807_030 Hb_117807_030 Hb_176472_010--Hb_117807_030 Hb_001235_090 Hb_001235_090 Hb_176472_010--Hb_001235_090 Hb_176472_010--Hb_034905_010 Hb_000545_160 Hb_000545_160 Hb_176472_010--Hb_000545_160 Hb_000120_690 Hb_000120_690 Hb_176472_010--Hb_000120_690 Hb_000440_030 Hb_000440_030 Hb_004316_090--Hb_000440_030 Hb_000638_040 Hb_000638_040 Hb_004316_090--Hb_000638_040 Hb_004316_090--Hb_000120_690 Hb_000264_220 Hb_000264_220 Hb_004316_090--Hb_000264_220 Hb_000705_280 Hb_000705_280 Hb_004316_090--Hb_000705_280 Hb_007975_040 Hb_007975_040 Hb_004316_090--Hb_007975_040 Hb_001242_010 Hb_001242_010 Hb_020712_050--Hb_001242_010 Hb_000110_390 Hb_000110_390 Hb_020712_050--Hb_000110_390 Hb_020712_050--Hb_000042_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0769414 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.121699 0 0

CAGE analysis