Hb_000705_280

Information

Type -
Description -
Location Contig705: 153293-153595
Sequence    

Annotation

kegg
ID vvi:100261261
description uncharacterized LOC100261261
nr
ID XP_010262626.1
description PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID F6HL75
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55088: 153029-153629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_280 0.0 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
2 Hb_006355_050 0.1683314663 - - -
3 Hb_000440_030 0.1805473606 - - 50 kDa protein [Hevea brasiliensis]
4 Hb_000638_040 0.1935838227 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
5 Hb_000083_040 0.1976440669 - - conserved hypothetical protein [Ricinus communis]
6 Hb_060455_010 0.2030275535 - - 50 kDa protein [Hevea brasiliensis]
7 Hb_008839_030 0.2064848805 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007177_010 0.2251386683 - - -
9 Hb_154340_010 0.230658226 - - truncated nitrate transporter [Fragaria vesca]
10 Hb_005020_010 0.2359882337 - - -
11 Hb_074238_010 0.2365114018 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
12 Hb_004316_090 0.2368677824 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
13 Hb_005142_010 0.2375816242 - - -
14 Hb_005841_030 0.2390224055 - - -
15 Hb_000572_050 0.2419447518 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
16 Hb_000226_100 0.2422426079 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
17 Hb_000038_190 0.2456477807 - - -
18 Hb_000046_150 0.2456477807 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000047_120 0.2456477807 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000062_120 0.2456477807 - - hypothetical protein JCGZ_17895 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_280 Hb_000705_280 Hb_006355_050 Hb_006355_050 Hb_000705_280--Hb_006355_050 Hb_000440_030 Hb_000440_030 Hb_000705_280--Hb_000440_030 Hb_000638_040 Hb_000638_040 Hb_000705_280--Hb_000638_040 Hb_000083_040 Hb_000083_040 Hb_000705_280--Hb_000083_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_006355_050--Hb_000083_040 Hb_007177_010 Hb_007177_010 Hb_006355_050--Hb_007177_010 Hb_006355_050--Hb_000638_040 Hb_061637_010 Hb_061637_010 Hb_006355_050--Hb_061637_010 Hb_021156_030 Hb_021156_030 Hb_006355_050--Hb_021156_030 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000440_030--Hb_007975_040 Hb_000226_100 Hb_000226_100 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_005142_010 Hb_005142_010 Hb_000638_040--Hb_005142_010 Hb_005841_030 Hb_005841_030 Hb_000638_040--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_000638_040--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_000638_040--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_000638_040--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000638_040--Hb_000201_020 Hb_000083_040--Hb_074238_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_154340_010 Hb_154340_010 Hb_000083_040--Hb_154340_010 Hb_060455_010--Hb_008839_030 Hb_060455_010--Hb_005142_010 Hb_060455_010--Hb_005841_030 Hb_060455_010--Hb_000572_050 Hb_060455_010--Hb_001403_030 Hb_060455_010--Hb_000971_060 Hb_008839_030--Hb_005142_010 Hb_008839_030--Hb_005841_030 Hb_008839_030--Hb_000572_050 Hb_008839_030--Hb_001403_030 Hb_008839_030--Hb_000971_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.237 0.286221 0.383235 31.6554 1.52557 3.14885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 811.632 18.1219 31.6989

CAGE analysis