Hb_007177_010

Information

Type -
Description -
Location Contig7177: 5622-7361
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007177_010 0.0 - - -
2 Hb_005020_010 0.0632002355 - - -
3 Hb_000572_050 0.118512114 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
4 Hb_001403_030 0.1185598102 - - -
5 Hb_000971_060 0.119360323 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000201_020 0.1197615406 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
7 Hb_001545_250 0.1198429973 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
8 Hb_005841_030 0.1199637167 - - -
9 Hb_005142_010 0.1209342865 - - -
10 Hb_010760_010 0.1219874849 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_070247_010 0.1236826656 - - hypothetical protein [Pseudomonas tolaasii]
12 Hb_020818_010 0.1241951533 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
13 Hb_000450_140 0.1250079985 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
14 Hb_012286_070 0.1250420455 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
15 Hb_008839_030 0.1414955048 - - conserved hypothetical protein [Ricinus communis]
16 Hb_061637_010 0.1446935646 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_060455_010 0.1466617008 - - 50 kDa protein [Hevea brasiliensis]
18 Hb_004785_010 0.1670758646 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_000174_190 0.1699635171 - - unnamed protein product [Coffea canephora]
20 Hb_076908_010 0.1704756661 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_007177_010 Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_007177_010--Hb_005020_010 Hb_000572_050 Hb_000572_050 Hb_007177_010--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_007177_010--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_007177_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_007177_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_007177_010--Hb_001545_250 Hb_005020_010--Hb_000971_060 Hb_005020_010--Hb_000201_020 Hb_005020_010--Hb_001545_250 Hb_005020_010--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_005020_010--Hb_010760_010 Hb_005841_030 Hb_005841_030 Hb_000572_050--Hb_005841_030 Hb_005142_010 Hb_005142_010 Hb_000572_050--Hb_005142_010 Hb_000572_050--Hb_001403_030 Hb_000572_050--Hb_000971_060 Hb_000572_050--Hb_000201_020 Hb_000572_050--Hb_001545_250 Hb_001403_030--Hb_000971_060 Hb_001403_030--Hb_000201_020 Hb_001403_030--Hb_001545_250 Hb_001403_030--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_001403_030--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_001403_030--Hb_020818_010 Hb_000971_060--Hb_000201_020 Hb_000971_060--Hb_001545_250 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010 Hb_000201_020--Hb_001545_250 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13676 0 0 0 0.367933 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 49.501 4.2269 0

CAGE analysis